Literature DB >> 28792005

Splicing and transcription touch base: co-transcriptional spliceosome assembly and function.

Lydia Herzel1,2, Diana S M Ottoz1, Tara Alpert1, Karla M Neugebauer1.   

Abstract

Several macromolecular machines collaborate to produce eukaryotic messenger RNA. RNA polymerase II (Pol II) translocates along genes that are up to millions of base pairs in length and generates a flexible RNA copy of the DNA template. This nascent RNA harbours introns that are removed by the spliceosome, which is a megadalton ribonucleoprotein complex that positions the distant ends of the intron into its catalytic centre. Emerging evidence that the catalytic spliceosome is physically close to Pol II in vivo implies that transcription and splicing occur on similar timescales and that the transcription and splicing machineries may be spatially constrained. In this Review, we discuss aspects of spliceosome assembly, transcription elongation and other co-transcriptional events that allow the temporal coordination of co-transcriptional splicing.

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Year:  2017        PMID: 28792005      PMCID: PMC5928008          DOI: 10.1038/nrm.2017.63

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  184 in total

1.  FUS functions in coupling transcription to splicing by mediating an interaction between RNAP II and U1 snRNP.

Authors:  Yong Yu; Robin Reed
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-29       Impact factor: 11.205

Review 2.  How cells get the message: dynamic assembly and function of mRNA-protein complexes.

Authors:  Michaela Müller-McNicoll; Karla M Neugebauer
Journal:  Nat Rev Genet       Date:  2013-03-12       Impact factor: 53.242

3.  A poly(A) addition site and a downstream termination region are required for efficient cessation of transcription by RNA polymerase II in the mouse beta maj-globin gene.

Authors:  J Logan; E Falck-Pedersen; J E Darnell; T Shenk
Journal:  Proc Natl Acad Sci U S A       Date:  1987-12       Impact factor: 11.205

4.  Sequences containing methylated nucleotides at the 5' termini of messenger RNAs: possible implications for processing.

Authors:  F Rottman; A J Shatkin; R P Perry
Journal:  Cell       Date:  1974-11       Impact factor: 41.582

5.  Cleavage of 5' splice site and lariat formation are independent of 3' splice site in yeast mRNA splicing.

Authors:  B C Rymond; M Rosbash
Journal:  Nature       Date:  1985 Oct 24-30       Impact factor: 49.962

6.  Structure of a yeast step II catalytically activated spliceosome.

Authors:  Chuangye Yan; Ruixue Wan; Rui Bai; Gaoxingyu Huang; Yigong Shi
Journal:  Science       Date:  2016-12-15       Impact factor: 47.728

7.  A unique structure at the carboxyl terminus of the largest subunit of eukaryotic RNA polymerase II.

Authors:  J L Corden; D L Cadena; J M Ahearn; M E Dahmus
Journal:  Proc Natl Acad Sci U S A       Date:  1985-12       Impact factor: 11.205

8.  Intron sequences involved in lariat formation during pre-mRNA splicing.

Authors:  R Reed; T Maniatis
Journal:  Cell       Date:  1985-05       Impact factor: 41.582

9.  Alpha-thalassaemia caused by a poly(A) site mutation reveals that transcriptional termination is linked to 3' end processing in the human alpha 2 globin gene.

Authors:  E Whitelaw; N Proudfoot
Journal:  EMBO J       Date:  1986-11       Impact factor: 11.598

Review 10.  Extremely fast and incredibly close: cotranscriptional splicing in budding yeast.

Authors:  Edward W J Wallace; Jean D Beggs
Journal:  RNA       Date:  2017-02-02       Impact factor: 4.942

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  110 in total

1.  Transcription Increases the Cooperativity of Ribonucleoprotein Assembly.

Authors:  Margaret L Rodgers; Sarah A Woodson
Journal:  Cell       Date:  2019-11-21       Impact factor: 41.582

Review 2.  Viewing Nuclear Architecture through the Eyes of Nocturnal Mammals.

Authors:  Yana Feodorova; Martin Falk; Leonid A Mirny; Irina Solovei
Journal:  Trends Cell Biol       Date:  2020-01-22       Impact factor: 20.808

3.  U2AF65 assemblies drive sequence-specific splice site recognition.

Authors:  Manel Tari; Valérie Manceau; Jean de Matha Salone; Asaki Kobayashi; David Pastré; Alexandre Maucuer
Journal:  EMBO Rep       Date:  2019-07-04       Impact factor: 8.807

Review 4.  Nascent RNA and the Coordination of Splicing with Transcription.

Authors:  Karla M Neugebauer
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-08-01       Impact factor: 10.005

Review 5.  Structural and functional modularity of the U2 snRNP in pre-mRNA splicing.

Authors:  Clarisse van der Feltz; Aaron A Hoskins
Journal:  Crit Rev Biochem Mol Biol       Date:  2019-11-20       Impact factor: 8.250

Review 6.  Nuclear compartmentalization as a mechanism of quantitative control of gene expression.

Authors:  Prashant Bhat; Drew Honson; Mitchell Guttman
Journal:  Nat Rev Mol Cell Biol       Date:  2021-08-02       Impact factor: 94.444

Review 7.  FLEP-seq: simultaneous detection of RNA polymerase II position, splicing status, polyadenylation site and poly(A) tail length at genome-wide scale by single-molecule nascent RNA sequencing.

Authors:  Yanping Long; Jinbu Jia; Weipeng Mo; Xianhao Jin; Jixian Zhai
Journal:  Nat Protoc       Date:  2021-07-30       Impact factor: 13.491

8.  The core spliceosomal factor U2AF1 controls cell-fate determination via the modulation of transcriptional networks.

Authors:  Abdelhamid Mahdi Laaref; Laurent Manchon; Yacine Bareche; Laure Lapasset; Jamal Tazi
Journal:  RNA Biol       Date:  2020-03-09       Impact factor: 4.652

Review 9.  Molecular mechanisms driving transcriptional stress responses.

Authors:  Anniina Vihervaara; Fabiana M Duarte; John T Lis
Journal:  Nat Rev Genet       Date:  2018-06       Impact factor: 53.242

10.  A combined RNA-seq and whole genome sequencing approach for identification of non-coding pathogenic variants in single families.

Authors:  Revital Bronstein; Elizabeth E Capowski; Sudeep Mehrotra; Alex D Jansen; Daniel Navarro-Gomez; Mathew Maher; Emily Place; Riccardo Sangermano; Kinga M Bujakowska; David M Gamm; Eric A Pierce
Journal:  Hum Mol Genet       Date:  2020-04-15       Impact factor: 6.150

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