Literature DB >> 23227298

Identification of Lactam-Lactim Tautomers of Aromatic Heterocycles in Aqueous Solution Using 2D IR Spectroscopy.

Chunte Sam Peng1, Andrei Tokmakoff.   

Abstract

The tautomerism of aromatic heterocycles is of great interest because it directly affects their chemical properties and biological function. The tautomerism of 2-pyridone, 6-chloro-2-pyridone, and 4-pyrimidinone have been examined in D(2)O using FTIR, two-dimensional IR (2D IR) spectroscopy and density functional theory (DFT) calculations. Using the 2D IR cross-peak patterns, the lactim tautomer of 6-chloro-2-pyridone was separated from the lactam tautomer, and its population was observed to increase with temperature. The equilibrium constant of [lac-tam]/[lactim] was determined to be 2.1 at room temperature for 6-chloro-2-pyridone. Similarly, the N1H and N3H lactam tautomers of 4-pyrimidinone were identified with 2D IR. To assign the vibrational modes of different tautomers, DFT calculations of these chemical species were performed with explicit water molecules, and the hydration effects on the vibrational frequencies and intensities were established.

Entities:  

Year:  2012        PMID: 23227298      PMCID: PMC3516185          DOI: 10.1021/jz301706a

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  17 in total

1.  Transient two-dimensional IR spectrometer for probing nanosecond temperature-jump kinetics.

Authors:  Hoi Sung Chung; Munira Khalil; Adam W Smith; Andrei Tokmakoff
Journal:  Rev Sci Instrum       Date:  2007-06       Impact factor: 1.523

2.  Anharmonic vibrational modes of nucleic acid bases revealed by 2D IR spectroscopy.

Authors:  Chunte Sam Peng; Kevin C Jones; Andrei Tokmakoff
Journal:  J Am Chem Soc       Date:  2011-09-12       Impact factor: 15.419

3.  Vibrational dynamics of DNA. II. Deuterium exchange effects and simulated IR absorption spectra.

Authors:  Chewook Lee; Minhaeng Cho
Journal:  J Chem Phys       Date:  2006-09-21       Impact factor: 3.488

4.  Dimerization and double proton transfer-induced tautomerism of 4(3H)-pyrimidinone in solution studied by IR spectroscopy and quantum chemical calculations.

Authors:  Adchara Padermshoke; Yukiteru Katsumoto; Misako Aida
Journal:  J Phys Chem B       Date:  2006-12-28       Impact factor: 2.991

5.  Structure of the eukaryotic thiamine pyrophosphate riboswitch with its regulatory ligand.

Authors:  Stéphane Thore; Marc Leibundgut; Nenad Ban
Journal:  Science       Date:  2006-05-04       Impact factor: 47.728

6.  Melting of a beta-hairpin peptide using isotope-edited 2D IR spectroscopy and simulations.

Authors:  Adam W Smith; Joshua Lessing; Ziad Ganim; Chunte Sam Peng; Andrei Tokmakoff; Santanu Roy; Thomas L C Jansen; Jasper Knoester
Journal:  J Phys Chem B       Date:  2010-09-02       Impact factor: 2.991

7.  Structural basis of thiamine pyrophosphate analogues binding to the eukaryotic riboswitch.

Authors:  Stéphane Thore; Christian Frick; Nenad Ban
Journal:  J Am Chem Soc       Date:  2008-06-06       Impact factor: 15.419

8.  Characterization of conformational exchange of a histidine side chain: protonation, rotamerization, and tautomerization of His61 in plastocyanin from Anabaena variabilis.

Authors:  Mathias A S Hass; D Flemming Hansen; Hans E M Christensen; Jens J Led; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2008-06-07       Impact factor: 15.419

9.  First principles calculations of the tautomers and pK(a) values of 8-oxoguanine: implications for mutagenicity and repair.

Authors:  Yun Hee Jang; William A Goddard; Katherine T Noyes; Lawrence C Sowers; Sungu Hwang; Doo Soo Chung
Journal:  Chem Res Toxicol       Date:  2002-08       Impact factor: 3.739

10.  Structure of an adenine-cytosine base pair in DNA and its implications for mismatch repair.

Authors:  W N Hunter; T Brown; N N Anand; O Kennard
Journal:  Nature       Date:  1986 Apr 10-16       Impact factor: 49.962

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  11 in total

Review 1.  Applications of two-dimensional infrared spectroscopy.

Authors:  Amanda L Le Sueur; Rachel E Horness; Megan C Thielges
Journal:  Analyst       Date:  2015-07-07       Impact factor: 4.616

2.  Tautomerism provides a molecular explanation for the mutagenic properties of the anti-HIV nucleoside 5-aza-5,6-dihydro-2'-deoxycytidine.

Authors:  Deyu Li; Bogdan I Fedeles; Vipender Singh; Chunte Sam Peng; Katherine J Silvestre; Allison K Simi; Jeffrey H Simpson; Andrei Tokmakoff; John M Essigmann
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-28       Impact factor: 11.205

3.  Direct observation of multiple tautomers of oxythiamine and their recognition by the thiamine pyrophosphate riboswitch.

Authors:  Vipender Singh; Chunte Sam Peng; Deyu Li; Koyel Mitra; Katherine J Silvestre; Andrei Tokmakoff; John M Essigmann
Journal:  ACS Chem Biol       Date:  2013-11-19       Impact factor: 5.100

4.  Two-dimensional IR spectroscopy of the anti-HIV agent KP1212 reveals protonated and neutral tautomers that influence pH-dependent mutagenicity.

Authors:  Chunte Sam Peng; Bogdan I Fedeles; Vipender Singh; Deyu Li; Tiffany Amariuta; John M Essigmann; Andrei Tokmakoff
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-02       Impact factor: 11.205

5.  Weakened N3 Hydrogen Bonding by 5-Formylcytosine and 5-Carboxylcytosine Reduces Their Base-Pairing Stability.

Authors:  Qing Dai; Paul J Sanstead; Chunte Sam Peng; Dali Han; Chuan He; Andrei Tokmakoff
Journal:  ACS Chem Biol       Date:  2015-12-17       Impact factor: 5.100

6.  Direct observation of ground-state lactam-lactim tautomerization using temperature-jump transient 2D IR spectroscopy.

Authors:  Chunte Sam Peng; Carlos R Baiz; Andrei Tokmakoff
Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-20       Impact factor: 11.205

Review 7.  Role of tautomerism in RNA biochemistry.

Authors:  Vipender Singh; Bogdan I Fedeles; John M Essigmann
Journal:  RNA       Date:  2015-01       Impact factor: 4.942

8.  2D IR spectroscopy of histidine: probing side-chain structure and dynamics via backbone amide vibrations.

Authors:  Ayanjeet Ghosh; Matthew J Tucker; Feng Gai
Journal:  J Phys Chem B       Date:  2014-04-18       Impact factor: 2.991

9.  Digital navigation of energy-structure-function maps for hydrogen-bonded porous molecular crystals.

Authors:  Chengxi Zhao; Linjiang Chen; Yu Che; Zhongfu Pang; Xiaofeng Wu; Yunxiang Lu; Honglai Liu; Graeme M Day; Andrew I Cooper
Journal:  Nat Commun       Date:  2021-02-05       Impact factor: 14.919

10.  Direct observation of single-molecule hydrogen-bond dynamics with single-bond resolution.

Authors:  Ce Zhou; Xingxing Li; Zhongliang Gong; Chuancheng Jia; Yuanwei Lin; Chunhui Gu; Gen He; Yuwu Zhong; Jinlong Yang; Xuefeng Guo
Journal:  Nat Commun       Date:  2018-02-23       Impact factor: 14.919

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