Literature DB >> 33547307

Digital navigation of energy-structure-function maps for hydrogen-bonded porous molecular crystals.

Chengxi Zhao1,2, Linjiang Chen3,4, Yu Che2, Zhongfu Pang2, Xiaofeng Wu2,5, Yunxiang Lu1, Honglai Liu1, Graeme M Day6, Andrew I Cooper7,8.   

Abstract

Energy-structure-function (ESF) maps can aid the targeted discovery of porous molecular crystals by predicting the stable crystalline arrangements along with their functions of interest. Here, we compute ESF maps for a series of rigid molecules that comprise either a triptycene or a spiro-biphenyl core, functionalized with six different hydrogen-bonding moieties. We show that the positioning of the hydrogen-bonding sites, as well as their number, has a profound influence on the shape of the resulting ESF maps, revealing promising structure-function spaces for future experiments. We also demonstrate a simple and general approach to representing and inspecting the high-dimensional data of an ESF map, enabling an efficient navigation of the ESF data to identify 'landmark' structures that are energetically favourable or functionally interesting. This is a step toward the automated analysis of ESF maps, an important goal for closed-loop, autonomous searches for molecular crystals with useful functions.

Entities:  

Year:  2021        PMID: 33547307      PMCID: PMC7865007          DOI: 10.1038/s41467-021-21091-w

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  30 in total

1.  Clustering by passing messages between data points.

Authors:  Brendan J Frey; Delbert Dueck
Journal:  Science       Date:  2007-01-11       Impact factor: 47.728

2.  Assembly of a Porous Supramolecular Polyknot from Rigid Trigonal Prismatic Building Blocks.

Authors:  Penghao Li; Zhijie Chen; Matthew R Ryder; Charlotte L Stern; Qing-Hui Guo; Xingjie Wang; Omar K Farha; J Fraser Stoddart
Journal:  J Am Chem Soc       Date:  2019-08-02       Impact factor: 15.419

Review 3.  Designing Hydrogen-Bonded Organic Frameworks (HOFs) with Permanent Porosity.

Authors:  Ichiro Hisaki; Chen Xin; Kiyonori Takahashi; Takayoshi Nakamura
Journal:  Angew Chem Int Ed Engl       Date:  2019-05-17       Impact factor: 15.336

4.  Two-step synthesis of hexaammonium triptycene: an air-stable building block for condensation reactions to extended triptycene derivatives.

Authors:  Michael Mastalerz; Stefanie Sieste; Mila Cenić; Iris M Oppel
Journal:  J Org Chem       Date:  2011-06-28       Impact factor: 4.354

5.  Interpenetration Isomerism in Triptycene-Based Hydrogen-Bonded Organic Frameworks.

Authors:  Penghao Li; Peng Li; Matthew R Ryder; Zhichang Liu; Charlotte L Stern; Omar K Farha; J Fraser Stoddart
Journal:  Angew Chem Int Ed Engl       Date:  2019-01-09       Impact factor: 15.336

6.  Modelling organic crystal structures using distributed multipole and polarizability-based model intermolecular potentials.

Authors:  Sarah L Price; Maurice Leslie; Gareth W A Welch; Matthew Habgood; Louise S Price; Panagiotis G Karamertzanis; Graeme M Day
Journal:  Phys Chem Chem Phys       Date:  2010-07-07       Impact factor: 3.676

7.  Convergence Properties of Crystal Structure Prediction by Quasi-Random Sampling.

Authors:  David H Case; Josh E Campbell; Peter J Bygrave; Graeme M Day
Journal:  J Chem Theory Comput       Date:  2016-01-13       Impact factor: 6.006

8.  An optimized intermolecular force field for hydrogen-bonded organic molecular crystals using atomic multipole electrostatics.

Authors:  Edward O Pyzer-Knapp; Hugh P G Thompson; Graeme M Day
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2016-07-16

9.  Functional materials discovery using energy-structure-function maps.

Authors:  Angeles Pulido; Linjiang Chen; Tomasz Kaczorowski; Daniel Holden; Marc A Little; Samantha Y Chong; Benjamin J Slater; David P McMahon; Baltasar Bonillo; Chloe J Stackhouse; Andrew Stephenson; Christopher M Kane; Rob Clowes; Tom Hasell; Andrew I Cooper; Graeme M Day
Journal:  Nature       Date:  2017-03-22       Impact factor: 49.962

10.  Mining predicted crystal structure landscapes with high throughput crystallisation: old molecules, new insights.

Authors:  Peng Cui; David P McMahon; Peter R Spackman; Ben M Alston; Marc A Little; Graeme M Day; Andrew I Cooper
Journal:  Chem Sci       Date:  2019-09-17       Impact factor: 9.825

View more
  3 in total

1.  Digital navigation of energy-structure-function maps for hydrogen-bonded porous molecular crystals.

Authors:  Chengxi Zhao; Linjiang Chen; Yu Che; Zhongfu Pang; Xiaofeng Wu; Yunxiang Lu; Honglai Liu; Graeme M Day; Andrew I Cooper
Journal:  Nat Commun       Date:  2021-02-05       Impact factor: 14.919

2.  Visualization and Quantification of Geometric Diversity in Metal-Organic Frameworks.

Authors:  Thomas C Nicholas; Eugeny V Alexandrov; Vladislav A Blatov; Alexander P Shevchenko; Davide M Proserpio; Andrew L Goodwin; Volker L Deringer
Journal:  Chem Mater       Date:  2021-10-27       Impact factor: 10.508

3.  Permanent Porosity in Hydroxamate Titanium-Organic Polyhedra.

Authors:  Belén Lerma-Berlanga; Javier Castells-Gil; Carolina R Ganivet; Neyvis Almora-Barrios; Javier González-Platas; Oscar Fabelo; Natalia M Padial; Carlos Martí-Gastaldo
Journal:  J Am Chem Soc       Date:  2021-12-08       Impact factor: 16.383

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.