Literature DB >> 23217365

The emerging diversity of transpososome architectures.

Fred Dyda1, Michael Chandler, Alison Burgess Hickman.   

Abstract

DNA transposases are enzymes that catalyze the movement of discrete pieces of DNA from one location in the genome to another. Transposition occurs through a series of controlled DNA strand cleavage and subsequent integration reactions that are carried out by nucleoprotein complexes known as transpososomes. Transpososomes are dynamic assemblies which must undergo conformational changes that control DNA breaks and ensure that, once started, the transposition reaction goes to completion. They provide a precise architecture within which the chemical reactions involved in transposon movement occur, but adopt different conformational states as transposition progresses. Their components also vary as they must, at some stage, include target DNA and sometimes even host-encoded proteins. A very limited number of transpososome states have been crystallographically captured, and here we provide an overview of the various structures determined to date. These structures include examples of DNA transposases that catalyze transposition by a cut-and-paste mechanism using an RNaseH-like nuclease catalytic domain, those that transpose using only single-stranded DNA substrates and targets, and the retroviral integrases that carry out an integration reaction very similar to DNA transposition. Given that there are a number of common functional requirements for transposition, it is remarkable how these are satisfied by complex assemblies that are so architecturally different.

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Year:  2012        PMID: 23217365      PMCID: PMC7292550          DOI: 10.1017/S0033583512000145

Source DB:  PubMed          Journal:  Q Rev Biophys        ISSN: 0033-5835            Impact factor:   5.318


  115 in total

1.  The terminal inverted repeats of IS911: requirements for synaptic complex assembly and activity.

Authors:  C Normand; G Duval-Valentin; L Haren; M Chandler
Journal:  J Mol Biol       Date:  2001-05-18       Impact factor: 5.469

2.  Evidence for "unseen" transposase--DNA contacts.

Authors:  Mindy Steiniger-White; Archna Bhasin; Scott Lovell; Ivan Rayment; William S Reznikoff
Journal:  J Mol Biol       Date:  2002-10-04       Impact factor: 5.469

3.  Functional domains of the IS1 transposase: analysis in vivo and in vitro.

Authors:  Bao Ton-Hoang; Catherine Turlan; Michael Chandler
Journal:  Mol Microbiol       Date:  2004-09       Impact factor: 3.501

4.  HIV-1 DNA integration: mechanism of viral DNA cleavage and DNA strand transfer.

Authors:  A Engelman; K Mizuuchi; R Craigie
Journal:  Cell       Date:  1991-12-20       Impact factor: 41.582

5.  A mechanism for Tn5 inhibition. carboxyl-terminal dimerization.

Authors:  L A Mahnke Braam; I Y Goryshin; W S Reznikoff
Journal:  J Biol Chem       Date:  1999-01-01       Impact factor: 5.157

6.  Crystal structure of the catalytic domain of HIV-1 integrase: similarity to other polynucleotidyl transferases.

Authors:  F Dyda; A B Hickman; T M Jenkins; A Engelman; R Craigie; D R Davies
Journal:  Science       Date:  1994-12-23       Impact factor: 47.728

Review 7.  Piecing together the structure of retroviral integrase, an important target in AIDS therapy.

Authors:  Mariusz Jaskolski; Jerry N Alexandratos; Grzegorz Bujacz; Alexander Wlodawer
Journal:  FEBS J       Date:  2009-04-14       Impact factor: 5.542

8.  Nuclear importation of Mariner transposases among eukaryotes: motif requirements and homo-protein interactions.

Authors:  Marie-Véronique Demattei; Sabah Hedhili; Ludivine Sinzelle; Christophe Bressac; Sophie Casteret; Nathalie Moiré; Jeanne Cambefort; Xavier Thomas; Nicolas Pollet; Pascal Gantet; Yves Bigot
Journal:  PLoS One       Date:  2011-08-18       Impact factor: 3.240

9.  Somatic retrotransposition alters the genetic landscape of the human brain.

Authors:  J Kenneth Baillie; Mark W Barnett; Kyle R Upton; Daniel J Gerhardt; Todd A Richmond; Fioravante De Sapio; Paul M Brennan; Patrizia Rizzu; Sarah Smith; Mark Fell; Richard T Talbot; Stefano Gustincich; Thomas C Freeman; John S Mattick; David A Hume; Peter Heutink; Piero Carninci; Jeffrey A Jeddeloh; Geoffrey J Faulkner
Journal:  Nature       Date:  2011-10-30       Impact factor: 49.962

10.  RAG1 core and V(D)J recombination signal sequences were derived from Transib transposons.

Authors:  Vladimir V Kapitonov; Jerzy Jurka
Journal:  PLoS Biol       Date:  2005-05-24       Impact factor: 8.029

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  21 in total

1.  An Atypical AAA+ ATPase Assembly Controls Efficient Transposition through DNA Remodeling and Transposase Recruitment.

Authors:  Ernesto Arias-Palomo; James M Berger
Journal:  Cell       Date:  2015-08-13       Impact factor: 41.582

2.  Lineage-specific expansions of TET/JBP genes and a new class of DNA transposons shape fungal genomic and epigenetic landscapes.

Authors:  Lakshminarayan M Iyer; Dapeng Zhang; Robson F de Souza; Patricia J Pukkila; Anjana Rao; L Aravind
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-07       Impact factor: 11.205

3.  piggyBac transposase tools for genome engineering.

Authors:  Xianghong Li; Erin R Burnight; Ashley L Cooney; Nirav Malani; Troy Brady; Jeffry D Sander; Janice Staber; Sarah J Wheelan; J Keith Joung; Paul B McCray; Frederic D Bushman; Patrick L Sinn; Nancy L Craig
Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-30       Impact factor: 11.205

4.  NMR solution structure of the RED subdomain of the Sleeping Beauty transposase.

Authors:  Tatiana A Konnova; Christopher M Singer; Irina V Nesmelova
Journal:  Protein Sci       Date:  2017-04-02       Impact factor: 6.725

5.  The Tn7 transposition regulator TnsC interacts with the transposase subunit TnsB and target selector TnsD.

Authors:  Ki Young Choi; Jeanelle M Spencer; Nancy L Craig
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-30       Impact factor: 11.205

Review 6.  Structural Insights on Retroviral DNA Integration: Learning from Foamy Viruses.

Authors:  Ga-Eun Lee; Eric Mauro; Vincent Parissi; Cha-Gyun Shin; Paul Lesbats
Journal:  Viruses       Date:  2019-08-22       Impact factor: 5.048

7.  Rigidity and flexibility characteristics of DD[E/D]-transposases Mos1 and Sleeping Beauty.

Authors:  Christopher M Singer; Diana Joy; Donald J Jacobs; Irina V Nesmelova
Journal:  Proteins       Date:  2019-01-10

Review 8.  P Transposable Elements in Drosophila and other Eukaryotic Organisms.

Authors:  Sharmistha Majumdar; Donald C Rio
Journal:  Microbiol Spectr       Date:  2015-04

Review 9.  Mechanisms of DNA Transposition.

Authors:  Alison B Hickman; Fred Dyda
Journal:  Microbiol Spectr       Date:  2015-04

10.  Insertion Sequence IS26 Reorganizes Plasmids in Clinically Isolated Multidrug-Resistant Bacteria by Replicative Transposition.

Authors:  Susu He; Alison Burgess Hickman; Alessandro M Varani; Patricia Siguier; Michael Chandler; John P Dekker; Fred Dyda
Journal:  MBio       Date:  2015-06-09       Impact factor: 7.867

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