Literature DB >> 23202747

ToxPi GUI: an interactive visualization tool for transparent integration of data from diverse sources of evidence.

David M Reif1, Myroslav Sypa, Eric F Lock, Fred A Wright, Ander Wilson, Tommy Cathey, Richard R Judson, Ivan Rusyn.   

Abstract

MOTIVATION: Scientists and regulators are often faced with complex decisions, where use of scarce resources must be prioritized using collections of diverse information. The Toxicological Prioritization Index (ToxPi™) was developed to enable integration of multiple sources of evidence on exposure and/or safety, transformed into transparent visual rankings to facilitate decision making. The rankings and associated graphical profiles can be used to prioritize resources in various decision contexts, such as testing chemical toxicity or assessing similarity of predicted compound bioactivity profiles. The amount and types of information available to decision makers are increasing exponentially, while the complex decisions must rely on specialized domain knowledge across multiple criteria of varying importance. Thus, the ToxPi bridges a gap, combining rigorous aggregation of evidence with ease of communication to stakeholders.
RESULTS: An interactive ToxPi graphical user interface (GUI) application has been implemented to allow straightforward decision support across a variety of decision-making contexts in environmental health. The GUI allows users to easily import and recombine data, then analyze, visualize, highlight, export and communicate ToxPi results. It also provides a statistical metric of stability for both individual ToxPi scores and relative prioritized ranks. AVAILABILITY: The ToxPi GUI application, complete user manual and example data files are freely available from http://comptox.unc.edu/toxpi.php.

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Year:  2012        PMID: 23202747      PMCID: PMC3988461          DOI: 10.1093/bioinformatics/bts686

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.931


  2 in total

1.  Predictive modeling of chemical hazard by integrating numerical descriptors of chemical structures and short-term toxicity assay data.

Authors:  Ivan Rusyn; Alexander Sedykh; Yen Low; Kathryn Z Guyton; Alexander Tropsha
Journal:  Toxicol Sci       Date:  2012-03-02       Impact factor: 4.849

2.  Endocrine profiling and prioritization of environmental chemicals using ToxCast data.

Authors:  David M Reif; Matthew T Martin; Shirlee W Tan; Keith A Houck; Richard S Judson; Ann M Richard; Thomas B Knudsen; David J Dix; Robert J Kavlock
Journal:  Environ Health Perspect       Date:  2010-09-08       Impact factor: 9.031

  2 in total
  32 in total

1.  High-content assays for hepatotoxicity using induced pluripotent stem cell-derived cells.

Authors:  Oksana Sirenko; Jayne Hesley; Ivan Rusyn; Evan F Cromwell
Journal:  Assay Drug Dev Technol       Date:  2013-11-14       Impact factor: 1.738

2.  Incorporating ToxCast and Tox21 datasets to rank biological activity of chemicals at Superfund sites in North Carolina.

Authors:  Sloane K Tilley; David M Reif; Rebecca C Fry
Journal:  Environ Int       Date:  2017-01-31       Impact factor: 9.621

3.  Use of high-throughput in vitro toxicity screening data in cancer hazard evaluations by IARC Monograph Working Groups.

Authors:  Weihsueh A Chiu; Kathryn Z Guyton; Matthew T Martin; David M Reif; Ivan Rusyn
Journal:  ALTEX       Date:  2017-07-24       Impact factor: 6.043

4.  Risk Characterization of Environmental Samples Using In Vitro Bioactivity and Polycyclic Aromatic Hydrocarbon Concentrations Data.

Authors:  Zunwei Chen; Dillon Lloyd; Yi-Hui Zhou; Weihsueh A Chiu; Fred A Wright; Ivan Rusyn
Journal:  Toxicol Sci       Date:  2021-01-06       Impact factor: 4.849

Review 5.  The Impact of Novel Assessment Methodologies in Toxicology on Green Chemistry and Chemical Alternatives.

Authors:  Ivan Rusyn; Nigel Greene
Journal:  Toxicol Sci       Date:  2018-02-01       Impact factor: 4.849

6.  In vitro cardiotoxicity assessment of environmental chemicals using an organotypic human induced pluripotent stem cell-derived model.

Authors:  Oksana Sirenko; Fabian A Grimm; Kristen R Ryan; Yasuhiro Iwata; Weihsueh A Chiu; Frederick Parham; Jessica A Wignall; Blake Anson; Evan F Cromwell; Mamta Behl; Ivan Rusyn; Raymond R Tice
Journal:  Toxicol Appl Pharmacol       Date:  2017-03-01       Impact factor: 4.219

Review 7.  Test driving ToxCast: endocrine profiling for 1858 chemicals included in phase II.

Authors:  Dayne Filer; Heather B Patisaul; Thaddeus Schug; David Reif; Kristina Thayer
Journal:  Curr Opin Pharmacol       Date:  2014-12       Impact factor: 5.547

8.  Assessment of beating parameters in human induced pluripotent stem cells enables quantitative in vitro screening for cardiotoxicity.

Authors:  Oksana Sirenko; Evan F Cromwell; Carole Crittenden; Jessica A Wignall; Fred A Wright; Ivan Rusyn
Journal:  Toxicol Appl Pharmacol       Date:  2013-10-01       Impact factor: 4.219

9.  Integrative chemical-biological read-across approach for chemical hazard classification.

Authors:  Yen Low; Alexander Sedykh; Denis Fourches; Alexander Golbraikh; Maurice Whelan; Ivan Rusyn; Alexander Tropsha
Journal:  Chem Res Toxicol       Date:  2013-08-05       Impact factor: 3.739

10.  Functional and Mechanistic Neurotoxicity Profiling Using Human iPSC-Derived Neural 3D Cultures.

Authors:  Oksana Sirenko; Frederick Parham; Steven Dea; Neha Sodhi; Steven Biesmans; Sergio Mora-Castilla; Kristen Ryan; Mamta Behl; Grischa Chandy; Carole Crittenden; Sarah Vargas-Hurlston; Oivin Guicherit; Ryan Gordon; Fabian Zanella; Cassiano Carromeu
Journal:  Toxicol Sci       Date:  2019-01-01       Impact factor: 4.849

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