Literature DB >> 23197527

Three-dimensional structures self-assembled from DNA bricks.

Yonggang Ke1, Luvena L Ong, William M Shih, Peng Yin.   

Abstract

We describe a simple and robust method to construct complex three-dimensional (3D) structures by using short synthetic DNA strands that we call "DNA bricks." In one-step annealing reactions, bricks with hundreds of distinct sequences self-assemble into prescribed 3D shapes. Each 32-nucleotide brick is a modular component; it binds to four local neighbors and can be removed or added independently. Each 8-base pair interaction between bricks defines a voxel with dimensions of 2.5 by 2.5 by 2.7 nanometers, and a master brick collection defines a "molecular canvas" with dimensions of 10 by 10 by 10 voxels. By selecting subsets of bricks from this canvas, we constructed a panel of 102 distinct shapes exhibiting sophisticated surface features, as well as intricate interior cavities and tunnels.

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Year:  2012        PMID: 23197527      PMCID: PMC3843647          DOI: 10.1126/science.1227268

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  42 in total

1.  A DNA-fuelled molecular machine made of DNA.

Authors:  B Yurke; A J Turberfield; A P Mills; F C Simmel; J L Neumann
Journal:  Nature       Date:  2000-08-10       Impact factor: 49.962

2.  Complex shapes self-assembled from single-stranded DNA tiles.

Authors:  Bryan Wei; Mingjie Dai; Peng Yin
Journal:  Nature       Date:  2012-05-30       Impact factor: 49.962

3.  DNA-templated self-assembly of protein arrays and highly conductive nanowires.

Authors:  Hao Yan; Sung Ha Park; Gleb Finkelstein; John H Reif; Thomas H LaBean
Journal:  Science       Date:  2003-09-26       Impact factor: 47.728

4.  Robust self-replication of combinatorial information via crystal growth and scission.

Authors:  Rebecca Schulman; Bernard Yurke; Erik Winfree
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-09       Impact factor: 11.205

5.  A logic-gated nanorobot for targeted transport of molecular payloads.

Authors:  Shawn M Douglas; Ido Bachelet; George M Church
Journal:  Science       Date:  2012-02-17       Impact factor: 47.728

6.  DNA-based self-assembly of chiral plasmonic nanostructures with tailored optical response.

Authors:  Anton Kuzyk; Robert Schreiber; Zhiyuan Fan; Günther Pardatscher; Eva-Maria Roller; Alexander Högele; Friedrich C Simmel; Alexander O Govorov; Tim Liedl
Journal:  Nature       Date:  2012-03-14       Impact factor: 49.962

7.  Nanotechnology: The importance of being modular.

Authors:  Paul W K Rothemund; Ebbe Sloth Andersen
Journal:  Nature       Date:  2012-05-31       Impact factor: 49.962

8.  Multilayer DNA origami packed on hexagonal and hybrid lattices.

Authors:  Yonggang Ke; Niels V Voigt; Kurt V Gothelf; William M Shih
Journal:  J Am Chem Soc       Date:  2012-01-13       Impact factor: 15.419

9.  Tug-of-war in motor protein ensembles revealed with a programmable DNA origami scaffold.

Authors:  N D Derr; B S Goodman; R Jungmann; A E Leschziner; W M Shih; S L Reck-Peterson
Journal:  Science       Date:  2012-10-11       Impact factor: 47.728

10.  Submicrometre geometrically encoded fluorescent barcodes self-assembled from DNA.

Authors:  Chenxiang Lin; Ralf Jungmann; Andrew M Leifer; Chao Li; Daniel Levner; George M Church; William M Shih; Peng Yin
Journal:  Nat Chem       Date:  2012-10       Impact factor: 24.427

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  209 in total

1.  Placing molecules with Bohr radius resolution using DNA origami.

Authors:  Jonas J Funke; Hendrik Dietz
Journal:  Nat Nanotechnol       Date:  2015-10-19       Impact factor: 39.213

2.  Guiding the folding pathway of DNA origami.

Authors:  Katherine E Dunn; Frits Dannenberg; Thomas E Ouldridge; Marta Kwiatkowska; Andrew J Turberfield; Jonathan Bath
Journal:  Nature       Date:  2015-08-19       Impact factor: 49.962

Review 3.  DNA Origami: Folded DNA-Nanodevices That Can Direct and Interpret Cell Behavior.

Authors:  Cathal J Kearney; Christopher R Lucas; Fergal J O'Brien; Carlos E Castro
Journal:  Adv Mater       Date:  2016-02-03       Impact factor: 30.849

4.  Light sensitization of DNA nanostructures via incorporation of photo-cleavable spacers.

Authors:  Richie E Kohman; Xue Han
Journal:  Chem Commun (Camb)       Date:  2015-04-04       Impact factor: 6.222

5.  Scaling down DNA circuits with competitive neural networks.

Authors:  Anthony J Genot; Teruo Fujii; Yannick Rondelez
Journal:  J R Soc Interface       Date:  2013-06-12       Impact factor: 4.118

6.  Site-specific positioning of dendritic alkyl chains on DNA cages enables their geometry-dependent self-assembly.

Authors:  Thomas G W Edwardson; Karina M M Carneiro; Christopher K McLaughlin; Christopher J Serpell; Hanadi F Sleiman
Journal:  Nat Chem       Date:  2013-09-01       Impact factor: 24.427

7.  Programmed coherent coupling in a synthetic DNA-based excitonic circuit.

Authors:  Étienne Boulais; Nicolas P D Sawaya; Rémi Veneziano; Alessio Andreoni; James L Banal; Toru Kondo; Sarthak Mandal; Su Lin; Gabriela S Schlau-Cohen; Neal W Woodbury; Hao Yan; Alán Aspuru-Guzik; Mark Bathe
Journal:  Nat Mater       Date:  2017-11-13       Impact factor: 43.841

8.  Programmable self-assembly.

Authors:  Ludovico Cademartiri; Kyle J M Bishop
Journal:  Nat Mater       Date:  2015-01       Impact factor: 43.841

9.  Materials Integration by Nanointaglio.

Authors:  Troy W Lowry; Aubrey Kusi-Appiah; Jingjiao Guan; David H Van Winkle; Michael W Davidson; Steven Lenhert
Journal:  Adv Mater Interfaces       Date:  2014-07       Impact factor: 6.147

Review 10.  DNA nanomaterials for preclinical imaging and drug delivery.

Authors:  Dawei Jiang; Christopher G England; Weibo Cai
Journal:  J Control Release       Date:  2016-08-13       Impact factor: 9.776

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