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Literature DB >> 22187940

Multilayer DNA origami packed on hexagonal and hybrid lattices.

Yonggang Ke¹, Niels V Voigt, Kurt V Gothelf, William M Shih.

Abstract

"Scaffolded DNA origami" has been proven to be a powerful and efficient approach to construct two-dimensional or three-dimensional objects with great complexity. Multilayer DNA origami has been demonstrated with helices packing along either honeycomb-lattice geometry or square-lattice geometry. Here we report successful folding of multilayer DNA origami with helices arranged on a close-packed hexagonal lattice. This arrangement yields a higher density of helical packing and therefore higher resolution of spatial addressing than has been shown previously. We also demonstrate hybrid multilayer DNA origami with honeycomb-lattice, square-lattice, and hexagonal-lattice packing of helices all in one design. The availability of hexagonal close-packing of helices extends our ability to build complex structures using DNA nanotechnology.

Entities: Chemical Disease Species

Mesh：

Substances：
DNA

Year: 2012 PMID： 22187940 PMCID： PMC3336742 DOI： 10.1021/ja209719k

Source DB: PubMed Journal: J Am Chem Soc ISSN： 0002-7863 Impact factor: 15.419

25 in total

1. A robust DNA mechanical device controlled by hybridization topology.

Authors: Hao Yan; Xiaoping Zhang; Zhiyong Shen; Nadrian C Seeman
Journal: Nature Date: 2002-01-03 Impact factor: 49.962

2. DNA-templated self-assembly of protein arrays and highly conductive nanowires.

Authors: Hao Yan; Sung Ha Park; Gleb Finkelstein; John H Reif; Thomas H LaBean
Journal: Science Date: 2003-09-26 Impact factor: 47.728

Review 3. DNA tile based self-assembly: building complex nanoarchitectures.

Authors: Chenxiang Lin; Yan Liu; Sherri Rinker; Hao Yan
Journal: Chemphyschem Date: 2006-08-11 Impact factor: 3.102

4. DNA-nanotube-induced alignment of membrane proteins for NMR structure determination.

Authors: Shawn M Douglas; James J Chou; William M Shih
Journal: Proc Natl Acad Sci U S A Date: 2007-04-02 Impact factor: 11.205

Review 5. An overview of structural DNA nanotechnology.

Authors: Nadrian C Seeman
Journal: Mol Biotechnol Date: 2007-07-12 Impact factor: 2.695

6. Folding DNA to create nanoscale shapes and patterns.

Authors: Paul W K Rothemund
Journal: Nature Date: 2006-03-16 Impact factor: 49.962

7. DNA-tile-directed self-assembly of quantum dots into two-dimensional nanopatterns.

Authors: Jaswinder Sharma; Yonggang Ke; Chenxiang Lin; Rahul Chhabra; Qiangbin Wang; Jeanette Nangreave; Yan Liu; Hao Yan
Journal: Angew Chem Int Ed Engl Date: 2008 Impact factor: 15.336

Review 8. Assembling materials with DNA as the guide.

Authors: Faisal A Aldaye; Alison L Palmer; Hanadi F Sleiman
Journal: Science Date: 2008-09-26 Impact factor: 47.728

9. A nanomechanical device based on the B-Z transition of DNA.

Authors: C Mao; W Sun; Z Shen; N C Seeman
Journal: Nature Date: 1999-01-14 Impact factor: 49.962

10. Molecular robots guided by prescriptive landscapes.

Authors: Kyle Lund; Anthony J Manzo; Nadine Dabby; Nicole Michelotti; Alexander Johnson-Buck; Jeanette Nangreave; Steven Taylor; Renjun Pei; Milan N Stojanovic; Nils G Walter; Erik Winfree; Hao Yan
Journal: Nature Date: 2010-05-13 Impact factor: 49.962

21 in total

Review 1. Spatially-interactive biomolecular networks organized by nucleic acid nanostructures.

Authors: Jinglin Fu; Minghui Liu; Yan Liu; Hao Yan
Journal: Acc Chem Res Date: 2012-05-29 Impact factor: 22.384

2. Light sensitization of DNA nanostructures via incorporation of photo-cleavable spacers.

Authors: Richie E Kohman; Xue Han
Journal: Chem Commun (Camb) Date: 2015-04-04 Impact factor: 6.222

3. Two design strategies for enhancement of multilayer-DNA-origami folding: underwinding for specific intercalator rescue and staple-break positioning.

Authors: Yonggang Ke; Gaëtan Bellot; Niels V Voigt; Elena Fradkov; William M Shih
Journal: Chem Sci Date: 2012-08-01 Impact factor: 9.825

Multilayer DNA origami packed on hexagonal and hybrid lattices.

1. A robust DNA mechanical device controlled by hybridization topology.

2. DNA-templated self-assembly of protein arrays and highly conductive nanowires.

Review 3. DNA tile based self-assembly: building complex nanoarchitectures.

4. DNA-nanotube-induced alignment of membrane proteins for NMR structure determination.

Review 5. An overview of structural DNA nanotechnology.

6. Folding DNA to create nanoscale shapes and patterns.

7. DNA-tile-directed self-assembly of quantum dots into two-dimensional nanopatterns.

Review 8. Assembling materials with DNA as the guide.

9. A nanomechanical device based on the B-Z transition of DNA.

10. Molecular robots guided by prescriptive landscapes.

Review 1. Spatially-interactive biomolecular networks organized by nucleic acid nanostructures.

2. Light sensitization of DNA nanostructures via incorporation of photo-cleavable spacers.

3. Two design strategies for enhancement of multilayer-DNA-origami folding: underwinding for specific intercalator rescue and staple-break positioning.

4. Cryo-EM structure of a 3D DNA-origami object.

5. Structure and conformational dynamics of scaffolded DNA origami nanoparticles.

6. DNA bipedal motor walking dynamics: an experimental and theoretical study of the dependency on step size.

Review 7. Building machines with DNA molecules.

8. Design and synthesis of pleated DNA origami nanotubes with adjustable diameters.

9. Tug-of-war in motor protein ensembles revealed with a programmable DNA origami scaffold.

10. Three-dimensional structures self-assembled from DNA bricks.