Literature DB >> 23194058

Measurement of proton chemical shifts in invisible states of slowly exchanging protein systems by chemical exchange saturation transfer.

Guillaume Bouvignies1, Lewis E Kay.   

Abstract

Chemical exchange saturation transfer (CEST) NMR spectroscopy has emerged as a powerful technique for studies of transiently formed, sparsely populated (excited) conformational states of protein molecules in slow exchange with a dominant structure. The most popular form of the experiment, and the version originally developed, uses a weak (1)H radio frequency field to perturb longitudinal magnetization of one state with the effect transferred to magnetization in the second conformation via chemical exchange. A significant limitation of the method for protein applications emerges from (1)H magnetization transfer via dipolar relaxation (NOE effect) that can severely complicate analysis of the resulting CEST profile. This is particularly an issue since the (1)H chemical shifts of the excited state, critical for structural studies of these elusive conformers, become difficult to extract. Here we present a method for measurement of these shifts via CEST experiments in which the NOE effect is not an issue. The methodology is illustrated through applications to a pair of exchanging systems where the results are cross-validated.

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Year:  2012        PMID: 23194058     DOI: 10.1021/jp311109u

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  25 in total

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Authors:  Arthur G Palmer
Journal:  J Magn Reson       Date:  2014-04       Impact factor: 2.229

2.  Probing the excited-state chemical shifts and exchange parameters by nitrogen-decoupled amide proton chemical exchange saturation transfer (HNdec-CEST).

Authors:  Qinglin Wu; Benjamin A Fenton; Jessica L Wojtaszek; Pei Zhou
Journal:  Chem Commun (Camb)       Date:  2017-07-27       Impact factor: 6.222

3.  Atomic-resolution map of the interactions between an amyloid inhibitor protein and amyloid β (Aβ) peptides in the monomer and protofibril states.

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Review 4.  Probing conformational dynamics in biomolecules via chemical exchange saturation transfer: a primer.

Authors:  Pramodh Vallurupalli; Ashok Sekhar; Tairan Yuwen; Lewis E Kay
Journal:  J Biomol NMR       Date:  2017-03-19       Impact factor: 2.835

5.  Probing slowly exchanging protein systems via ¹³Cα-CEST: monitoring folding of the Im7 protein.

Authors:  Alexandar L Hansen; Guillaume Bouvignies; Lewis E Kay
Journal:  J Biomol NMR       Date:  2013-02-06       Impact factor: 2.835

6.  Hsp70 biases the folding pathways of client proteins.

Authors:  Ashok Sekhar; Rina Rosenzweig; Guillaume Bouvignies; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2016-05-02       Impact factor: 11.205

Review 7.  Characterizing micro-to-millisecond chemical exchange in nucleic acids using off-resonance R relaxation dispersion.

Authors:  Atul Rangadurai; Eric S Szymaski; Isaac J Kimsey; Honglue Shi; Hashim M Al-Hashimi
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2019-05-11       Impact factor: 9.795

8.  The antibiotic cyclomarin blocks arginine-phosphate-induced millisecond dynamics in the N-terminal domain of ClpC1 from Mycobacterium tuberculosis.

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Journal:  J Biol Chem       Date:  2018-04-09       Impact factor: 5.157

9.  Magnetization transfer contrast MRI for non-invasive assessment of innate and adaptive immune responses against alginate-encapsulated cells.

Authors:  Kannie W Y Chan; Guanshu Liu; Peter C M van Zijl; Jeff W M Bulte; Michael T McMahon
Journal:  Biomaterials       Date:  2014-06-13       Impact factor: 12.479

10.  Characterizing slow chemical exchange in nucleic acids by carbon CEST and low spin-lock field R(1ρ) NMR spectroscopy.

Authors:  Bo Zhao; Alexandar L Hansen; Qi Zhang
Journal:  J Am Chem Soc       Date:  2013-12-18       Impact factor: 15.419

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