Literature DB >> 23167247

Azurin as a protein scaffold for a low-coordinate nonheme iron site with a small-molecule binding pocket.

Matthew P McLaughlin1, Marius Retegan, Eckhard Bill, Thomas M Payne, Hannah S Shafaat, Salvador Peña, Jawahar Sudhamsu, Amy A Ensign, Brian R Crane, Frank Neese, Patrick L Holland.   

Abstract

The apoprotein of Pseudomonas aeruginosa azurin binds iron(II) to give a 1:1 complex, which has been characterized by electronic absorption, Mössbauer, and NMR spectroscopies, as well as X-ray crystallography and quantum-chemical computations. Despite potential competition by water and other coordinating residues, iron(II) binds tightly to the low-coordinate site. The iron(II) complex does not react with chemical redox agents to undergo oxidation or reduction. Spectroscopically calibrated quantum-chemical computations show that the complex has high-spin iron(II) in a pseudotetrahedral coordination environment, which features interactions with side chains of two histidines and a cysteine as well as the C═O of Gly45. In the (5)A(1) ground state, the d(z(2)) orbital is doubly occupied. Mutation of Met121 to Ala leaves the metal site in a similar environment but creates a pocket for reversible binding of small anions to the iron(II) center. Specifically, azide forms a high-spin iron(II) complex and cyanide forms a low-spin iron(II) complex.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 23167247      PMCID: PMC3515693          DOI: 10.1021/ja308346b

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  90 in total

1.  Dioxygen Activation by Enzymes Containing Binuclear Non-Heme Iron Clusters.

Authors:  Bradley J. Wallar; John D. Lipscomb
Journal:  Chem Rev       Date:  1996-11-07       Impact factor: 60.622

2.  Mechanism of Molybdenum Nitrogenase.

Authors:  Barbara K. Burgess; David J. Lowe
Journal:  Chem Rev       Date:  1996-11-07       Impact factor: 60.622

3.  Construction of a novel redox protein by rational design: conversion of a disulfide bridge into a mononuclear iron-sulfur center.

Authors:  D E Benson; M S Wisz; W Liu; H W Hellinga
Journal:  Biochemistry       Date:  1998-05-19       Impact factor: 3.162

4.  Theoretical analysis of the spin Hamiltonian parameters in Co(II)S4 complexes, using density functional theory and correlated ab initio methods.

Authors:  Dimitrios Maganas; Silvia Sottini; Panayotis Kyritsis; Edgar J J Groenen; Frank Neese
Journal:  Inorg Chem       Date:  2011-08-17       Impact factor: 5.165

5.  Axial methionine has much less influence on reduction potentials in a CuA center than in a blue copper center.

Authors:  Hee Jung Hwang; Steven M Berry; Mark J Nilges; Yi Lu
Journal:  J Am Chem Soc       Date:  2005-05-25       Impact factor: 15.419

6.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

7.  Comparative Cd-113 nuclear magnetic resonance studies of Cd(II)-substituted blue copper proteins.

Authors:  H R Engeseth; D R McMillin; J D Otvos
Journal:  J Biol Chem       Date:  1984-04-25       Impact factor: 5.157

8.  Comparison of cyanide and carbon monoxide as ligands in iron(II) porphyrinates.

Authors:  Jianfeng Li; Bruce C Noll; Charles E Schulz; W Robert Scheidt
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

9.  Construction and characterization of an azurin analog for the purple copper site in cytochrome c oxidase.

Authors:  M Hay; J H Richards; Y Lu
Journal:  Proc Natl Acad Sci U S A       Date:  1996-01-09       Impact factor: 11.205

10.  The catalytic Mn2+ sites in the enolase-inhibitor complex: crystallography, single-crystal EPR, and DFT calculations.

Authors:  Raanan Carmieli; Todd M Larsen; George H Reed; Samir Zein; Frank Neese; Daniella Goldfarb
Journal:  J Am Chem Soc       Date:  2007-03-17       Impact factor: 15.419

View more
  11 in total

1.  A single protein redox ruler.

Authors:  Rajneesh K Bains; Jeffrey J Warren
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-16       Impact factor: 11.205

2.  An internal electron reservoir enhances catalytic CO2 reduction by a semisynthetic enzyme.

Authors:  Camille R Schneider; Hannah S Shafaat
Journal:  Chem Commun (Camb)       Date:  2016-08-02       Impact factor: 6.222

3.  Generation of high-spin iron(I) in a protein environment using cryoreduction.

Authors:  Roman M Davydov; Matthew P McLaughlin; Eckhard Bill; Brian M Hoffman; Patrick L Holland
Journal:  Inorg Chem       Date:  2013-06-10       Impact factor: 5.165

4.  Understanding and Modulating Metalloenzymes with Unnatural Amino Acids, Non-Native Metal Ions, and Non-Native Metallocofactors.

Authors:  Evan N Mirts; Ambika Bhagi-Damodaran; Yi Lu
Journal:  Acc Chem Res       Date:  2019-03-26       Impact factor: 22.384

5.  Artificial Iron Proteins: Modeling the Active Sites in Non-Heme Dioxygenases.

Authors:  Kelsey R Miller; Jonathan D Paretsky; Alec H Follmer; Tillmann Heinisch; Kaustuv Mittra; Sheraz Gul; In-Sik Kim; Franklin D Fuller; Alexander Batyuk; Kyle D Sutherlin; Aaron S Brewster; Asmit Bhowmick; Nicholas K Sauter; Jan Kern; Junko Yano; Michael T Green; Thomas R Ward; A S Borovik
Journal:  Inorg Chem       Date:  2020-04-20       Impact factor: 5.165

6.  Enzyme Substrate Complex of the H200C Variant of Homoprotocatechuate 2,3-Dioxygenase: Mössbauer and Computational Studies.

Authors:  Katlyn K Meier; Melanie S Rogers; Elena G Kovaleva; John D Lipscomb; Emile L Bominaar; Eckard Münck
Journal:  Inorg Chem       Date:  2016-06-08       Impact factor: 5.165

Review 7.  Repurposing metalloproteins as mimics of natural metalloenzymes for small-molecule activation.

Authors:  Daniel J DiPrimio; Patrick L Holland
Journal:  J Inorg Biochem       Date:  2021-03-18       Impact factor: 4.336

8.  Density Functional Calculations for Prediction of 57Fe Mössbauer Isomer Shifts and Quadrupole Splittings in β-Diketiminate Complexes.

Authors:  Sean F McWilliams; Emma Brennan-Wydra; K Cory MacLeod; Patrick L Holland
Journal:  ACS Omega       Date:  2017-06-12

9.  Supramolecular Porphyrin Cages Assembled at Molecular-Materials Interfaces for Electrocatalytic CO Reduction.

Authors:  Ming Gong; Zhi Cao; Wei Liu; Eva M Nichols; Peter T Smith; Jeffrey S Derrick; Yi-Sheng Liu; Jinjia Liu; Xiaodong Wen; Christopher J Chang
Journal:  ACS Cent Sci       Date:  2017-09-13       Impact factor: 14.553

10.  Stepwise nitrosylation of the nonheme iron site in an engineered azurin and a molecular basis for nitric oxide signaling mediated by nonheme iron proteins.

Authors:  Shiliang Tian; Ruixi Fan; Therese Albert; Rahul L Khade; Huiguang Dai; Kevin A Harnden; Parisa Hosseinzadeh; Jing Liu; Mark J Nilges; Yong Zhang; Pierre Moënne-Loccoz; Yisong Guo; Yi Lu
Journal:  Chem Sci       Date:  2021-03-31       Impact factor: 9.825

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.