Literature DB >> 27275865

Enzyme Substrate Complex of the H200C Variant of Homoprotocatechuate 2,3-Dioxygenase: Mössbauer and Computational Studies.

Katlyn K Meier1, Melanie S Rogers2, Elena G Kovaleva3, John D Lipscomb2, Emile L Bominaar1, Eckard Münck1.   

Abstract

The extradiol, aromatic ring-cleaving enzyme homoprotocatechuate 2,3-dioxygenase (HPCD) catalyzes a complex chain of reactions that involve second sphere residues of the active site. The importance of the second-sphere residue His200 was demonstrated in studies of HPCD variants, such as His200Cys (H200C), which revealed significant retardations of certain steps in the catalytic process as a result of the substitution, allowing novel reaction cycle intermediates to be trapped for spectroscopic characterization. As the H200C variant largely retains the wild-type active site structure and produces the correct ring-cleaved product, this variant presents a valuable target for mechanistic HPCD studies. Here, the high-spin Fe(II) states of resting H200C and the H200C-homoprotocatechuate enzyme-substrate (ES) complex have been characterized with Mössbauer spectroscopy to assess the electronic structures of the active site in these states. The analysis reveals a high-spin Fe(II) center in a low symmetry environment that is reflected in the values of the zero-field splitting (ZFS) (D ≈ - 8 cm(-1), E/D ≈ 1/3 in ES), as well as the relative orientations of the principal axes of the (57)Fe magnetic hyperfine (A) and electric field gradient (EFG) tensors relative to the ZFS tensor axes. A spin Hamiltonian analysis of the spectra for the ES complex indicates that the magnetization axis of the integer-spin S = 2 Fe(II) system is nearly parallel to the symmetry axis, z, of the doubly occupied dxy ground orbital deduced from the EFG and A-values, an observation, which cannot be rationalized by DFT assisted crystal-field theory. In contrast, ORCA/CASSCF calculations for the ZFS tensor in combination with DFT calculations for the EFG- and A-tensors describe the experimental data remarkably well.

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Year:  2016        PMID: 27275865      PMCID: PMC4924929          DOI: 10.1021/acs.inorgchem.6b00148

Source DB:  PubMed          Journal:  Inorg Chem        ISSN: 0020-1669            Impact factor:   5.165


  36 in total

1.  Invited award contribution for ACS Award in Inorganic Chemistry. Geometric and electronic structure contributions to function in bioinorganic chemistry: active sites in non-heme iron enzymes.

Authors:  E I Solomon
Journal:  Inorg Chem       Date:  2001-07-16       Impact factor: 5.165

Review 2.  Non-heme iron-dependent dioxygenases: unravelling catalytic mechanisms for complex enzymatic oxidations.

Authors:  Timothy D H Bugg; S Ramaswamy
Journal:  Curr Opin Chem Biol       Date:  2008-02-20       Impact factor: 8.822

3.  Homoprotocatechuate 2,3-dioxygenase from Brevibacterium fuscum. A dioxygenase with catalase activity.

Authors:  M A Miller; J D Lipscomb
Journal:  J Biol Chem       Date:  1996-03-08       Impact factor: 5.157

4.  Azurin as a protein scaffold for a low-coordinate nonheme iron site with a small-molecule binding pocket.

Authors:  Matthew P McLaughlin; Marius Retegan; Eckhard Bill; Thomas M Payne; Hannah S Shafaat; Salvador Peña; Jawahar Sudhamsu; Amy A Ensign; Brian R Crane; Frank Neese; Patrick L Holland
Journal:  J Am Chem Soc       Date:  2012-11-20       Impact factor: 15.419

Review 5.  The 2-His-1-carboxylate facial triad: a versatile platform for dioxygen activation by mononuclear non-heme iron(II) enzymes.

Authors:  Kevin D Koehntop; Joseph P Emerson; Lawrence Que
Journal:  J Biol Inorg Chem       Date:  2005-03-01       Impact factor: 3.358

6.  Visualizing the substrate-, superoxo-, alkylperoxo-, and product-bound states at the nonheme Fe(II) site of homogentisate dioxygenase.

Authors:  Jae-Hun Jeoung; Martin Bommer; Tzong-Yuan Lin; Holger Dobbek
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-15       Impact factor: 11.205

Review 7.  The ins and outs of ring-cleaving dioxygenases.

Authors:  Frédéric H Vaillancourt; Jeffrey T Bolin; Lindsay D Eltis
Journal:  Crit Rev Biochem Mol Biol       Date:  2006 Jul-Aug       Impact factor: 8.250

8.  Swapping metals in Fe- and Mn-dependent dioxygenases: evidence for oxygen activation without a change in metal redox state.

Authors:  Joseph P Emerson; Elena G Kovaleva; Erik R Farquhar; John D Lipscomb; Lawrence Que
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-20       Impact factor: 11.205

9.  EPR and Mössbauer studies of protocatechuate 4,5-dioxygenase. Characterization of a new Fe2+ environment.

Authors:  D M Arciero; J D Lipscomb; B H Huynh; T A Kent; E Münck
Journal:  J Biol Chem       Date:  1983-12-25       Impact factor: 5.157

10.  A Long-Lived Fe(III)-(Hydroperoxo) Intermediate in the Active H200C Variant of Homoprotocatechuate 2,3-Dioxygenase: Characterization by Mössbauer, Electron Paramagnetic Resonance, and Density Functional Theory Methods.

Authors:  Katlyn K Meier; Melanie S Rogers; Elena G Kovaleva; Michael M Mbughuni; Emile L Bominaar; John D Lipscomb; Eckard Münck
Journal:  Inorg Chem       Date:  2015-10-20       Impact factor: 5.165

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