Literature DB >> 9585516

Construction of a novel redox protein by rational design: conversion of a disulfide bridge into a mononuclear iron-sulfur center.

D E Benson1, M S Wisz, W Liu, H W Hellinga.   

Abstract

A mononuclear iron-sulfur center, capable of reversible electron transfer, has been introduced into thioredoxin, a protein devoid of such sites, using an automated, structure-based design algorithm. One of the sites predicted by the Dezymer computer program to introduce a tetrahedral tetrathiolate iron center included the intrinsic Cys32-Cys35 disulfide of wild-type thioredoxin and two additional mutants, Trp28Cys and Ile75Cys, thereby converting a disulfide into a metal-based redox center. This designed protein forms a 1:1 monomeric complex with FeIII, whose electronic absorption and EPR spectra closely resemble those of the rubredoxins, as intended. CoII spectra provided further confirmation of tetrahedral tetrathiolate metal coordination. The designed protein is capable of undergoing successive cycles of oxidation and reduction. The computer-generated design only took into account the geometry of the primary coordination shell around the metal. We have therefore demonstrated that simple geometrical considerations can be sufficient to reproduce the dominant electronic structure and reactivity of a simple metal-based redox center.

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Year:  1998        PMID: 9585516     DOI: 10.1021/bi980583d

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  22 in total

1.  Rational design of nascent metalloenzymes.

Authors:  D E Benson; M S Wisz; H W Hellinga
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

2.  Computational design of a Zn2+ receptor that controls bacterial gene expression.

Authors:  M A Dwyer; L L Looger; H W Hellinga
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-19       Impact factor: 11.205

3.  Protein fabrication automation.

Authors:  J Colin Cox; Janel Lape; Mahmood A Sayed; Homme W Hellinga
Journal:  Protein Sci       Date:  2007-01-22       Impact factor: 6.725

4.  Motif-directed flexible backbone design of functional interactions.

Authors:  James J Havranek; David Baker
Journal:  Protein Sci       Date:  2009-06       Impact factor: 6.725

5.  Benchmarking a computational design method for the incorporation of metal ion-binding sites at symmetric protein interfaces.

Authors:  William A Hansen; Sagar D Khare
Journal:  Protein Sci       Date:  2017-05-31       Impact factor: 6.725

Review 6.  Protein design: toward functional metalloenzymes.

Authors:  Fangting Yu; Virginia M Cangelosi; Melissa L Zastrow; Matteo Tegoni; Jefferson S Plegaria; Alison G Tebo; Catherine S Mocny; Leela Ruckthong; Hira Qayyum; Vincent L Pecoraro
Journal:  Chem Rev       Date:  2014-03-24       Impact factor: 60.622

Review 7.  Catalysis and Electron Transfer in De Novo Designed Helical Scaffolds.

Authors:  Tyler B J Pinter; Karl J Koebke; Vincent L Pecoraro
Journal:  Angew Chem Int Ed Engl       Date:  2020-03-02       Impact factor: 15.336

8.  Proton and metal ion-dependent assembly of a model diiron protein.

Authors:  A Pasternak; J Kaplan; J D Lear; W F Degrado
Journal:  Protein Sci       Date:  2001-05       Impact factor: 6.725

9.  Histidine placement in de novo-designed heme proteins.

Authors:  B R Gibney; P L Dutton
Journal:  Protein Sci       Date:  1999-09       Impact factor: 6.725

10.  Miniaturized metalloproteins: application to iron-sulfur proteins.

Authors:  A Lombardi; D Marasco; O Maglio; L Di Costanzo; F Nastri; V Pavone
Journal:  Proc Natl Acad Sci U S A       Date:  2000-10-24       Impact factor: 11.205

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