| Literature DB >> 23166760 |
Benoit Talbot1, Dany Garant, Sébastien Rioux Paquette, Julien Mainguy, Fanie Pelletier.
Abstract
Evaluating the permeability of potential barriers to movement, dispersal and gene exchanges can help describe spreading patterns of wildlife diseases. Here, we used landscape genetics methods to assess the genetic structure of the striped skunk (Mephitis mephitis), which is a frequent vector of rabies, a lethal zoonosis of great concern for public health. Our main objective was to identify landscape elements shaping the genetic structure of this species in Southern Québec, Canada, in an area where the raccoon rabies variant has been detected. We hypothesised that geographic distance and landscape barriers, such as highways and major rivers, would modulate genetic structure. We genotyped a total of 289 individuals sampled across a large area (22,000 km²) at nice microsatellite loci. Genetic structure analyses identified a single genetic cluster in the study area. Major rivers and highways, however, influenced the genetic relatedness among sampled individuals. Sex-specific analyses revealed that rivers significantly limited dispersal only for females while highways only had marginal effects. Rivers and highways did not significantly affect male dispersal. These results support the contention that female skunks are more philopatric than males. Overall, our results suggest that the effects of major rivers and highways on dispersal are sex-specific and rather weak and are thus unlikely to prevent the spread of rabies within and among striped skunk populations.Entities:
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Year: 2012 PMID: 23166760 PMCID: PMC3498222 DOI: 10.1371/journal.pone.0049736
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Map of the study area in Southern Québec, Canada.
The location of sampled striped skunk (Mephitis mephitis) in this study is shown by a black star for 2009 (n = 148) sampling year and a grey circle for 2010 (n = 141) sampling year. Grey shapes are major bodies of water such as rivers and lakes in and around the study area. Thin black lines represent major highways found in the study area. St Lawrence River and the 5 selected rivers for our analyses (a: Châteauguay, b: Richelieu, c: Yamaska, d: Magog, e: Saint-François) are identified on the map. The city of Montréal is also identified.
Number of alleles (A), observed (HO) and expected (HE) heterozygosity, inbreeding coefficient (F is), and the probability for null alleles for the nine microsatellite loci of the striped skunk (Mephitis mephitis) used in our study in Southern Québec, Canada (N = 289) in 2009 and 2010.
| Locus | A | HO | HE |
| Null alleles |
| Meph42–15 | 7 | 0.578 | 0.615 | 0.060 | 0.033 |
| Meph22–16 | 10 | 0.752 | 0.780 | 0.036 | 0.015 |
| Meph22–70 | 19 | 0.877 | 0.899 | 0.024 | 0.012 |
| Meph42–73 | 13 | 0.801 | 0.829 | 0.034 | 0.016 |
| Meme84 | 12 | 0.815 | 0.852 | 0.043 | 0.021 |
| Meph22–14 | 15 | 0.869 | 0.852 | −0.019 | −0.011 |
| Meme15 | 9 | 0.751 | 0.765 | 0.018 | 0.012 |
| Meme75 | 13 | 0.876 | 0.871 | −0.005 | −0.004 |
| Meph22–19 | 9 | 0.782 | 0.804 | 0.028 | 0.015 |
| Overall | 11.9 | 0.789 | 0.807 | 0.024 | N/A |
Figure 2Number of genetic clusters observed in the study area.
Mean and standard deviation of estimated ln-probabilities of data are presented for genetic clusters K = 1 to 5, calculated with the Structure software for striped skunks (Mephitis mephitis) in the study area in Southern Québec, Canada, in 2009 and 2010.
Results of univariate and multivariate regression analyses of genetic distance matrices with the MRM [68], using 10 000 permutations, for striped skunks (Mephitis mephitis) originating from Southern Québec, Canada, in 2009 and 2010.
| Type of test | Model | Explanatory variable(s) | Slope (95% CI) |
|
|
| 1 | Geographic distance | 0.0002 (0.0001,0.0003) | 0.026 |
| 2 | Number of rivers | 0.0089 (0.0041,0.0137) | < 0.001 | |
| 3 | Highways | 0.0069 (0.0023,0.0115) | 0.002 | |
| 4 | Year | −0.0002 (−0.0045,0.0041) | 0.88 | |
|
| 5 | Geographic distance | −2×10−5 (−0.0002,0.0002) | 0.83 |
| Rivers | 0.0073 (0.0008,0,0138) | 0.007 | ||
| Highways | 0.0051 (−0.0001,0.0103) | 0.052 | ||
| Year | −0.0008 (−0.0052,0.0036) | 0.59 |
Results of univariate and multivariate regressions analyses of genetic distance matrices with the MRM [68], using 10 000 permutations for each sex separately in striped skunks (Mephitis mephitis) originating from Southern Québec, Canada, in 2009 and 2010 (P values for slopes between sexes were calculated using Student’s t test).
| Sex | Females | Males |
| ||||
| Type of test | Model | Explanatory variable | Slope (95% CI) |
| Slope (95% CI) |
| |
|
| 1 | Geographic distance | 0.0003 (0.0001,0.0005) | 0.011 | 0.0001 (−0.0001,0.0003) | 0.27 | – |
| 2 | Number of rivers | 0.0154 (0.0070,0.0238) | < 0.001 | 0.0048 (−0.0043,0.0139) | 0.26 | – | |
| 3 | Number of highways | 0.0129 (0.0038,0.0220) | 0.001 | 0.0036 (−0.0041,0.0113) | 0.34 | – | |
| 4 | Year | 0.0059 (−0.0113,0.0231) | 0.46 | 0.0016 (−0.0105,0.0137) | 0.73 | – | |
|
| 5 | Geographic distance | −0.0001 (−0.0005,0.0003) | 0.56 | 0.0001 (−0.0002,0.0004) | 0.55 | 0.42 |
| Number of rivers | 0.0138 (0.0025,0.0250) | 0.005 | 0.0007 (−0.0109,0.0123) | 0.89 | 0.11 | ||
| Number of highways | 0.0088 (−0.0017,0.0193) | 0.058 | 0.0017 (−0.0068,0.0102) | 0.70 | 0.30 | ||
| Year | 0.0053 (−0.0117,0.0223) | 0.51 | 0.0018 (−0.0102,0.0138) | 0.70 | 0.74 | ||