Literature DB >> 23163596

Stability of nucleosomes containing homogenously ubiquitylated H2A and H2B prepared using semisynthesis.

Beat Fierz1, Sinan Kilic, Aaron R Hieb, Karolin Luger, Tom W Muir.   

Abstract

Post-translational modifications (PTMs) of histones are an essential feature in the dynamic regulation of chromatin. One of these modifications, ubiquitylation, has been speculated to directly influence the stability of the nucleosome, which represents the basic building block of chromatin. Here we report a strategy for the semisynthesis of site-specifically ubiquitylated histone H2A (uH2A). This branched protein was generated through a three-piece expressed protein ligation approach including a traceless ligation at valine. uH2A could be efficiently incorporated into nucleosomes, thereby opening the way to detailed biochemical and biophysical studies on the function of this PTM. Accordingly, we used uH2A, as well as a previously generated ubiquitylated H2B, in chaperone-coupled nucleosome stability assays to demonstrate that the direct effect of ubiquitylated histones on nucleosomal stability is in fact modest.

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Year:  2012        PMID: 23163596      PMCID: PMC3535264          DOI: 10.1021/ja308908p

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  33 in total

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Authors:  T M Hackeng; J H Griffin; P E Dawson
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-31       Impact factor: 11.205

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Journal:  Nat Struct Mol Biol       Date:  2004-12-05       Impact factor: 15.369

Review 3.  Strategies for the reconstitution of chromatin.

Authors:  Alexandra Lusser; James T Kadonaga
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Review 4.  Protein ligation: an enabling technology for the biophysical analysis of proteins.

Authors:  Vasant Muralidharan; Tom W Muir
Journal:  Nat Methods       Date:  2006-06       Impact factor: 28.547

5.  Histone H2B monoubiquitination functions cooperatively with FACT to regulate elongation by RNA polymerase II.

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6.  Histone H4-K16 acetylation controls chromatin structure and protein interactions.

Authors:  Michael Shogren-Knaak; Haruhiko Ishii; Jian-Min Sun; Michael J Pazin; James R Davie; Craig L Peterson
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7.  Effects of histone acetylation, ubiquitination and variants on nucleosome stability.

Authors:  W Li; S Nagaraja; G P Delcuve; M J Hendzel; J R Davie
Journal:  Biochem J       Date:  1993-12-15       Impact factor: 3.857

8.  Histone H2B (and H2A) ubiquitination allows normal histone octamer and core particle reconstitution.

Authors:  N Davies; G G Lindsey
Journal:  Biochim Biophys Acta       Date:  1994-06-21

9.  Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis.

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Journal:  Cell       Date:  2004-01-09       Impact factor: 41.582

10.  Nucleosome accessibility governed by the dimer/tetramer interface.

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Journal:  Nucleic Acids Res       Date:  2010-12-21       Impact factor: 16.971

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  28 in total

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Review 5.  Application of the protein semisynthesis strategy to the generation of modified chromatin.

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Journal:  Annu Rev Biochem       Date:  2015-03-12       Impact factor: 23.643

Review 6.  Studies of biochemical crosstalk in chromatin with semisynthetic histones.

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7.  Reprogramming the specificity of sortase enzymes.

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Review 8.  Histone ubiquitylation and its roles in transcription and DNA damage response.

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9.  The U4/U6 recycling factor SART3 has histone chaperone activity and associates with USP15 to regulate H2B deubiquitination.

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Review 10.  The winding pathway to erythropoietin along the chemistry-biology frontier: a success at last.

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