Literature DB >> 15789029

Strategies for the reconstitution of chromatin.

Alexandra Lusser1, James T Kadonaga.   

Abstract

In eukaryotes, chromatin is the natural form of DNA in the nucleus. For hundreds of millions of years, DNA-binding factors have evolved with chromatin. It is therefore more desirable to study the molecular mechanisms of DNA-directed processes with chromatin than with naked DNA templates. To this end, it is necessary to reconstitute DNA and histones into chromatin. Fortunately, there are a variety of methods by which a nonspecialist can prepare chromatin of high quality. Here, we describe strategies and techniques for the reconstitution of chromatin in vitro.

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Year:  2004        PMID: 15789029     DOI: 10.1038/nmeth709

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  36 in total

Review 1.  Organization of interphase chromatin.

Authors:  Rachel A Horowitz-Scherer; Christopher L Woodcock
Journal:  Chromosoma       Date:  2005-12-17       Impact factor: 4.316

2.  A 368-base-pair cis-acting HWP1 promoter region, HCR, of Candida albicans confers hypha-specific gene regulation and binds architectural transcription factors Nhp6 and Gcf1p.

Authors:  Samin Kim; Michael J Wolyniak; Janet F Staab; Paula Sundstrom
Journal:  Eukaryot Cell       Date:  2007-01-12

Review 3.  Histones: at the crossroads of peptide and protein chemistry.

Authors:  Manuel M Müller; Tom W Muir
Journal:  Chem Rev       Date:  2014-10-20       Impact factor: 60.622

4.  Partially Assembled Nucleosome Structures at Atomic Detail.

Authors:  Georgy N Rychkov; Andrey V Ilatovskiy; Igor B Nazarov; Alexey V Shvetsov; Dmitry V Lebedev; Alexander Y Konev; Vladimir V Isaev-Ivanov; Alexey V Onufriev
Journal:  Biophys J       Date:  2016-12-28       Impact factor: 4.033

5.  Stability of nucleosomes containing homogenously ubiquitylated H2A and H2B prepared using semisynthesis.

Authors:  Beat Fierz; Sinan Kilic; Aaron R Hieb; Karolin Luger; Tom W Muir
Journal:  J Am Chem Soc       Date:  2012-11-26       Impact factor: 15.419

6.  A simple and versatile system for the ATP-dependent assembly of chromatin.

Authors:  Mai T Khuong; Jia Fei; Grisel Cruz-Becerra; James T Kadonaga
Journal:  J Biol Chem       Date:  2017-10-05       Impact factor: 5.157

7.  Atomic force microscope imaging of chromatin assembled in Xenopus laevis egg extract.

Authors:  Hongxia Fu; Benjamin S Freedman; Chwee Teck Lim; Rebecca Heald; Jie Yan
Journal:  Chromosoma       Date:  2011-01-11       Impact factor: 4.316

Review 8.  Pioneer factors and their in vitro identification methods.

Authors:  Xinyang Yu; Michael J Buck
Journal:  Mol Genet Genomics       Date:  2020-04-15       Impact factor: 3.291

9.  The U4/U6 recycling factor SART3 has histone chaperone activity and associates with USP15 to regulate H2B deubiquitination.

Authors:  Lindsey Long; Joseph P Thelen; Melonnie Furgason; Mahmood Haj-Yahya; Ashraf Brik; Dongmei Cheng; Junmin Peng; Tingting Yao
Journal:  J Biol Chem       Date:  2014-02-13       Impact factor: 5.157

10.  The structure of (CENP-A-H4)(2) reveals physical features that mark centromeres.

Authors:  Nikolina Sekulic; Emily A Bassett; Danielle J Rogers; Ben E Black
Journal:  Nature       Date:  2010-08-25       Impact factor: 49.962

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