We report on a new swept source polarization sensitive optical coherence tomography scan engine that is based on polarization maintaining (PM) fiber technology. The light source is a Fourier domain mode locked laser with a PM cavity that operates in the 1300 nm wavelength regime. It is equipped with a PM buffer stage that doubles the fundamental sweep frequency of 54.5 kHz. The fiberization allows coupling of the scan engine to different delivery probes. In a first demonstration, we use the system for imaging human skin at an A-scan rate of 109 kHz. The system illuminates the sample with circularly polarized light and measures reflectivity, retardation, optic axis orientation, and Stokes vectors simultaneously. Furthermore, depolarization can be quantified by calculating the degree of polarization uniformity (DOPU). The high scanning speed of the system enables dense sampling in both, the x- and y-direction, which provides the opportunity to use 3D evaluation windows for DOPU calculation. This improves the spatial resolution of DOPU images considerably.
We report on a new swept source polarization sensitive optical coherence tomography scan engine that is based on polarization maintaining (PM) fiber technology. The light source is a Fourier domain mode locked laser with a PM cavity that operates in the 1300 nm wavelength regime. It is equipped with a PM buffer stage that doubles the fundamental sweep frequency of 54.5 kHz. The fiberization allows coupling of the scan engine to different delivery probes. In a first demonstration, we use the system for imaging human skin at an A-scan rate of 109 kHz. The system illuminates the sample with circularly polarized light and measures reflectivity, retardation, optic axis orientation, and Stokes vectors simultaneously. Furthermore, depolarization can be quantified by calculating the degree of polarization uniformity (DOPU). The high scanning speed of the system enables dense sampling in both, the x- and y-direction, which provides the opportunity to use 3D evaluation windows for DOPU calculation. This improves the spatial resolution of DOPU images considerably.
Optical coherence tomography (OCT) has been introduced two decades ago [1] as a non-invasive modality for imaging transparent and translucent tissues with
resolution of a few µm [2,3]. The first (and still dominating) application field of OCT was, because of the
high transparency of ocular media, ophthalmology, where OCT revolutionized retinal diagnostics
[4]. OCT is also very useful to image scattering tissues down
to a depth of ~1–2 mm. An organ particularly suited for OCT imaging is, because of its direct
accessibility to the optical radiation, the skin. Therefore, it is not surprising that dermatologic
applications of OCT were introduced quite early [5].
Meanwhile, several dermatologic applications of OCT were reported (see, e.g., [6-8]) and the effect of wavelength for
different purposes of skin imaging was analyzed [9]. Other
tissues of interest for OCT imaging are those accessible by endoscopic probes, like the mucosa of
the gastro-intestinal tract [10,11] and vessels [12,13]. Several applications of endoscopic OCT have been reported, ranging from
Barrett’s esophagus [14] to differentiation of various
types of plaques in vessel walls [15].While commercial OCT scanners for dermatologic and endoscopic applications are now available and
have been used for imaging of various lesions, they still have a drawback: they record images only
on an intensity basis and therefore do not exploit the full information available in the
backscattered light. Polarization sensitive (PS) OCT overcomes this limitation [16,17]. By illuminating the
sample with one or more well defined polarization states, and by performing a polarization sensitive
detection that splits the interfering beams in the detection arm into two orthogonally polarized
components that are measured in parallel, several quantities like retardation [16,17], optic axis orientation [18], diattenuation [19-21], Stokes vectors [22,23], and Jones [19,24,25] and Müller matrices [26,27] can be measured. In addition, a quantity related to the degree
of polarization (which is not directly accessible by OCT), the (spatially or temporally averaged)
degree of polarization uniformity (DOPU) [28,29] can be obtained by PS-OCT.Although the majority of PS-OCT work reported to date is related to ophthalmology [30], dermatology was one of its first applications [31,32]. The change in skin
birefringence caused by thermal denaturation of collagen suggested PS-OCT application for burn depth
imaging [33,34]. These
and other [35] early applications of PS-OCT to skin imaging
were based on bulk optic time domain OCT. Endoscopic applications of OCT require fiber optics. This
complicates the setup because usual single mode fibers don't preserve the polarization state of
the backscattered beam. However, endoscopic PS-OCT applications seem attractive in applications like
laryngoscopy, where it has been shown that the regular birefringence pattern of the vocal folds is
destroyed in cancerous lesions [36], or in cardiovascular
imaging where PS-OCT was suggested to be used for evaluating the stability of atherosclerotic
plaques [37]. The introduction of systems using multiple
input polarization states [33] solved the problems mentioned
above and enabled endoscopic PS-OCT [38], however, at the
cost of higher system complexity. First applications of polarization maintaining (PM) fibers were
implemented in time domain technology and required either splicing of two PM fibers with exactly
equal length (which is difficult to achieve), where the slow axis of the first fiber was coupled to
the fast axis of the second fiber, and vice versa [39], or
the implementation of an additional pair of compensating birefringent wedges that had to be
carefully adjusted to compensate the optical path length difference introduced by the PM fibers
[40].While the early applications of PS-OCT were based, as all the early OCT work, on time domain OCT,
Fourier domain methods [41] were demonstrated for PS-OCT skin
imaging as early as 2002 [42], one year before the Fourier
domain sensitivity advantage was discovered [43-45]. After this discovery, dermatologic and endoscopic PS-OCT
imaging also switched to Fourier domain methods, either to spectrometer based (SD) techniques [46] or to swept source (SS) technology [47]. While both, SD and SS OCT show the same sensitivity advantage, SS-OCT has
recently attracted more interest in the wavelength range around 1300 nm (which is usually applied
for imaging of scattering tissues) because of the technology boost of swept sources. Especially the
introduction of the Fourier domain mode locked (FDML) laser [48] has enabled imaging speeds of > 100 kA-lines/s, with recent records in the MHz range
[49].We recently developed various PS-OCT systems for ophthalmic applications that use only a single
input polarization state to measure reflectivity, retardation, optic axis orientation, Stokes
vectors and DOPU simultaneously. The latest versions of these instruments are based on SD technique
using a PM fiber based Michelson interferometer [50,51] and on SS technique using a bulk optics Mach–Zehnder
interferometer in combination with a PM fiber optic polarization sensitive detection arm [52]. The more complicated Mach–Zehnder interferometer was
chosen in the latter case since it directly enables dual balanced detection which is required to
reduce noise in SS OCT. (A related alternative approach employing a PM fiber based Michelson
interferometer and additional bulk optics components was recently reported [53].)It is the purpose of this work to combine the principles of these two systems to develop a new,
versatile fiber optic high-speed PS-OCT scan engine based on a passively polarization stabilized
FDML laser that operates at a speed beyond 100 kA-lines/s. The system is based on PM fiber
technology and shall, in the final stage, enable dermatologic and endoscopic imaging via coupling to
various flexible probes. In a first stage, we describe the scan engine, report on its parameters,
and demonstrate its application for imaging various areas of human skin in vivo. Furthermore, as an
example of the increased benefit of high-speed imaging, we demonstrate, for the first time, the use
of a new 3D windowing technique that improves the spatial resolution of DOPU images
considerably.
2. Methods
We have developed a PM fiber based PS-OCT scan engine that allows fast in-vivo and noninvasive
biomedical imaging of biological samples and demonstrate its use for skin imaging. Our system is
based on methods previously reported for spectrometer based (SD) instruments [50] and was modified to accommodate the special requirements of swept source
technique.
2.1. FDML swept laser source
The built PS-OCT system makes use of a custom-developed high-speed broadband Fourier-Domain Mode
Locked (FDML) swept laser source operating in the region of 1300 nm wavelength. The sweep frequency
of the FDML laser is doubled by using an external buffer stage. Principles, technical and functional
details of buffered FDML swept laser sources have been previously reported [48,54-58]. Figure 1
shows the layout of the FDML laser and buffer stage (please note that only the first buffer
stage was used for the experiments described here; the second and third buffer stages, which can be
used to increase the scanning speed by factors 4 and 8 were disconnected). The laser and the buffer
stage were designed to maintain the polarization state of the light. For this purpose, PM panda
fibers and PM fiber components were used throughout most parts of the laser. To avoid excessive
costs of long PM fibers, the delay fibers are standard single mode (SM) fibers. However, the
application of a Faraday rotation mirror (FRM) and a double pass lead to an efficient cancellation
of all polarization rotation effects in the delay fibers. Therefore, the combination of the three
elements: polarizing beam splitter (PBS), standard SM fiber and FRM is polarization maintaining
[58]. This approach has the main advantages of a reliable
preservation of the polarization state of the light inside the FDML laser and a simplification of
the fiber-based connection between the FDML laser and the buffer stage, by avoiding the needs of
inserting additional polarization control elements, e.g. polarization paddles, between the two
devices.
Fig. 1
Layout of FDML laser and buffer stage (only the first buffer stage was used in the experiments
described here, the second and third buffer stages were disconnected). FFP-TF, fiber Fabry-Perot
tunable filter; ISO, isolator; SOA, semiconductor optical amplifier; FRM, Faraday rotation mirror;
PBS, polarizing beam splitter; SM, single mode; PM, polarization maintaining.
Layout of FDML laser and buffer stage (only the first buffer stage was used in the experiments
described here, the second and third buffer stages were disconnected). FFP-TF, fiber Fabry-Perot
tunable filter; ISO, isolator; SOA, semiconductor optical amplifier; FRM, Faraday rotation mirror;
PBS, polarizing beam splitter; SM, single mode; PM, polarization maintaining.The physical cavity length of the laser used here yields a fundamental optical roundtrip
frequency of 54.5 kHz; this basic sweep frequency was doubled to 109 kHz by the buffer stage. The
duty cycle of our system, including the buffer stage, is ~80%. The source central wavelength,
λ0, and spectral bandwidth, Δλ, are user-tunable and, for optimal
OCT imaging performances, these parameters—with other FDML laser driving signals—need
to be fine-adjusted according to the specific sweep frequency imposed by the laser cavity length.
For the experiments reported here, λ0 was set to 1315 nm, providing a sweep range
of Δλ = 120 nm (after the buffer stage), and an output power of 23.9 mW.
2.2. PS-OCT system description
The fiber-based PS-OCT system was built using PM panda fibers and PM panda fiber-based optical
components. With reference to Fig. 2
, the polarized light emitted by the FDML laser source is launched into the input port (c1) of
the circulator (OLCIR-P-3-131-300-90-FP, Opto-Link, Hong Kong). The circulator has special
polarization properties: light coupled from port c1 to c2 is linearly polarized, while light coupled
from port c2 to c3 maintains its polarization state. Therefore the light exiting from the second
port (c2) is linearly polarized along the slow axis of the PM fiber. Port c2 is coupled to the input
port (t1) of the 50/50 optical coupler (OLCPL-T-P-22-131-50-90-FP-B, Opto-Link, Hong Kong). Sample
and reference arms contain 30 m of PM fiber, each, to shift ghost images (caused by cross-coupling
into the other polarization channel) out of the visible image range.
Fig. 2
Sketch of PM fiber-based PS-OCT setup. FDML, Fourier-domain mode-locked swept laser source and
buffer stage; circ. –circulator; C, collimator; 30 m, 30 m long PM fibers; QWP, quarter wave
plate; M, mirror; XY scan, galvo scanner; L, sample arm lens; PBS, polarizing beam splitter; BPD,
balanced photodetector; DAQ, data acquisition card; PC, personal computer; a-e, representation of
theoretical polarization state of the probing radiation.
Sketch of PM fiber-based PS-OCT setup. FDML, Fourier-domain mode-locked swept laser source and
buffer stage; circ. –circulator; C, collimator; 30 m, 30 m long PM fibers; QWP, quarter wave
plate; M, mirror; XY scan, galvo scanner; L, sample arm lens; PBS, polarizing beam splitter; BPD,
balanced photodetector; DAQ, data acquisition card; PC, personal computer; a-e, representation of
theoretical polarization state of the probing radiation.The reference light exiting the PM fiber of the 50:50 coupler is linearly polarized along the
slow axis of the fiber. It traverses a quarter wave plate (QWP) oriented at 22.5° to the slow
axis. After reflection at the reference mirror and double passing the QWP, the light is in a linear
polarization state oriented at 45°, providing equal reference power in both, the fast and the
slow axes of the fiber, and thus in the two orthogonal polarization states into which the light is
split by the polarizing fiber beam splitter PBS.The sample light exiting the sample arm fiber is also polarized along the slow axis of the fiber.
It traverses a QWP oriented at 45°, providing circularly polarized light to the sample. The
beam is raster scanned over the sample using an x-y galvo scanner and a focusing lens of 50 mm focal
length. After backscattering by the sample and traversing the QWP a second time, the sample light is
in an elliptical polarization state. This state has to be measured to retrieve the sample's
polarizing properties. On back-coupling into the PM fiber of the sample arm, the beam is decomposed
into two orthogonal states. While the amplitudes of the electric field components of the light
travelling along the two polarization axes of the PM fiber is maintained and can be retrieved
directly, the phase difference is altered by the different propagation speeds of the two components
and has to be retrieved by an additional post processing step [50].Sample and reference beams interfere in the 50:50 PM fiber coupler, and the interfering light
beams exiting ports t1 and t4 of the coupler are guided towards two polarizing fiber beam splitters
PBS (OLCS-12-131-90-S1-75-FP, Opto-Link, Hong Kong): one component directly via port t4, the other
via port t1 and the circulator that maintains the polarization state, as mentioned above. To avoid
phase shifts between the oscillating interference signals travelling along the different parts
(which would disturb dual balanced detection), the total lengths of the two fibers guiding the two
components are matched. The fibers connecting the circulator, the 50:50 coupler and the two
polarizing beam splitters were spliced to avoid cross coupling of polarization states. The output
ports of the horizontal polarization state of the two PBS were plugged into a dual balanced
photodetector (Thorlabs, PDB130C, 350 MHz) and, similarly, the two output ports of the vertical
polarization state of the two PBS were plugged into the other photodetector (same model) to convert
the optic signal into an electric equivalent, enabling dual balanced detection. The two electric
signals are digitized by a two-channel high speed data acquisition board (Alazartech, ATS9870,
1GS/s, 8 bit). Data acquisition and operation of the galvo scanners are synchronized and controlled
by a field programmable gate array (FPGA) board (National Instruments), employing custom software
developed under LabView (National Instruments) environment.With a power of ~5 mW at the sample, we measured a sensitivity of 110 dB near zero delay with a
roll-off of ~3 dB over the first mm; for larger distances (1–4 mm), the decay was ~6 dB/mm
(cf. Fig. 3
). The maximum imaging range (determined by the highest frequency the system can measure) is
~7.5 mm. Because of practical reasons (sensitivity decay, penetration depth), we limited the imaging
depth to ~2.5 mm in the experiments shown here. The dynamic range within reflectivity images was
~40–45 dB. The measured axial resolution (FWHM width of point spread function (PSF)) was 6.5
µm in air. This resolution was measured at an imaging depth of 0.625 mm, approximately the
midpoint of useful depth scan range for skin imaging. The resolution slightly degrades for larger
and shorter path delays. This increase of PSF width is due to non-perfect system dispersion
compensation, originating from both the FDML source and the fiber-based optical setup, and
consequently incorrect rescaling of acquired spectral data into equidistant data points in k-space.
However, the deviation within the imaging range required for skin imaging is negligible.
Fig. 3
Sensitivity and roll-off of the PS-OCT system.
Sensitivity and roll-off of the PS-OCT system.
2.3. Data acquisition and processing
To perform skin imaging, a volumetric data acquisition scan protocol based on a raster scan
pattern was implemented. The protocol includes simultaneous acquisition of data from both
polarization channels. For each channel, the acquired volume is composed of a user-selected number
of frames (B-scans), each of which consists of a user-selected number of records (A-scans). Typical
values are 256 B-scans × 1024 A-scans. The geometrical dimensions (width and height) of the
scan area on the sample, expressed in mm, are also user-selectable, to enable flexible adaptation of
the desired imaging surface area according to the selected volume size (records ×
frames).Fourier domain OCT methods require that the data are sampled equidistant in wavenumber (k) space.
Since the Fabry-Perot tunable filter of the swept source is driven with a sinusoidal signal and no
k-clocking is implemented, numerical rescaling of the raw signal is performed to compensate for the
non-linear sweep. For this purpose, a calibration signal is recorded prior to imaging by placing a
mirror in the sample arm. The recorded signal is then used to measure sweep nonlinearities and to
correct signals that are recorded in the following imaging session by resampling them to be linear
in k-space.Data pre-processing comprises the following steps: removal of fixed pattern noise (caused by
internal reflections), data resampling to be linear in k-space (see above), numerical dispersion
compensation, and inverse FFT. Optionally, spectral side lobe suppression by windowing and zero
padding can be applied. From the complex data sets provided by the inverse FFT, amplitude and phase
information are extracted. These steps are performed for both polarization channels.In a next step, reflectivity and polarization parameters are calculated. While the amplitude of
the signals obtained can be directly used to derive reflectivity and retardation [18,59], the phase difference
between the two signals, which is required to calculate axis orientation and Stokes vectors [18,28,59], has to be corrected for an offset introduced by the PM fibers. This is done by
a numerical method recently described [50]. (It should be
mentioned that this method of phase offset correction provides only short-time stability, i.e., only
relative axis orientation and variation within an image can be measured.) As a final parameter, DOPU
is calculated from the Stokes vector data (not shown here) by spatial averaging of Stokes vector
elements in a floating evaluation window. Details of the algorithm can be found in ref [28]. For the polarization data to be reliable, the signal-to-noise
ratio of the signal amplitude has to be above a certain threshold for the corresponding pixel. To
avoid display of unreliable data points, all the image points that don’t meet that criterion
are displayed in gray in the polarization images.In addition to the previously described averaging within 2D windows located within a single
B-scan, we present here, for the first time, results of averaging over 3D windows that extend over
adjacent B-scans. The size (width (x), height (y), and depth (z), in pixels) of the 3D window is
conveniently chosen to include, on one hand, a significant number of data points available for
Stokes vector elements statistics, and, on the other hand, to improve resolution within a B-scan.
The trade-off limits between these two opposite aspects of DOPU computation, as previously described
for 2D windowing [28], are now improved (cf. section 3).
Assuming that a floating evaluation window composed of e.g. 96 voxels represents a meaningful
statistical set to compute the value of a pixel of a DOPU tomogram, a 2D window will distribute
these elements over a rectangular area, e.g. 12 × 8 pixels (width × depth), within a
single B-scan. The resolution of the DOPU image will correspond to the geometrical dimension of the
2D window. A 3D window, e.g. of 6 × 4 × 4 pixels (width × depth ×
height) will distribute the same number of voxels over a volume composed of smaller areas (6
× 4, width × depth) within each B-scan and distributed over several subsequent B-scans
( × 4, height). In this case, the resolution of the DOPU image using 3D windowing will
correspond to the 3D window width × depth, while carrying the statistical information of the
whole 3D window volume. High A-scan rate in conjunction with fast data acquisition and storage makes
it possible to acquire large data volumes with high sample density along the y direction (height)
while minimizing distortion effects due to sample motion. This enables meaningful 3D window DOPU
computation on the acquired volume with better spatial resolution.Due to limited processing speed, the instrument has different operation modes. A
preview/alignment mode that is used to get a coarse overview of the imaged area and to optimize the
alignment of scanning optics with respect to the sample: In this mode, a reduced amount of data (128
A-scans/B-scan) is recorded and displayed online in real time (just the intensity image of a single
channel). Once alignment is adjusted, the recording mode is activated and an entire 3D data set is
recorded. After recording of the data set, the calculation of the polarization parameters, as
described above, is performed offline for the full data set. The calculation time is ~200 seconds
for a 3D data set of 1024 × 256 A-scans (which includes reflectivity, retardation, and axis
orientation images). DOPU images are calculated optionally, the processing time depending on the
evaluation window size.
3. Results
Figure 4
shows PS-OCT skin images recorded across the proximal interphalangeal joint of the middle
finger. Figures 4(a), 4(b), 4(c), and 4(d), are single-frame reflectivity, retardation, axis orientation, and DOPU B-scans,
respectively. Figures 4(e), 4(f), and 4(g) show averaged B-scans of reflectivity,
retardation, and axis orientation (average of 15 frames recorded at the same position, methods of
averaging: see ref [29]; as an additional processing step for
generating averaged images, residual motion artifacts between the individual frames were corrected
by image cross correlation methods). The improvement of image quality and the reduction of speckle
noise achieved by averaging are clearly observed. Figure 4(h)
shows a photograph of the scan location.
Fig. 4
PS-OCT images of human skin. Proximal interphalangeal joint of middle finger (PIP) region.
(a)–(d) single frame images; (e)–(g) average of 15 frames. (a), (e) reflectivity (log
scale); (b), (f) retardation (color scale: 0°–90°); (c), (g) axis orientation
(color scale, −90° to +90°); (d) DOPU (color scale, 0–1), 2D DOPU window
(12(x) × 6(z) pixels or 55 × 38 µm2); (h) photo of imaged area, line
shows approximate B-scan position. Scale bar dimensions: 0.5 mm (x, geometrical distance; z, optical
distance). SC, stratum corneum; ED, epidermis; D, dermis; CLS, “column” like
structure.
PS-OCT images of human skin. Proximal interphalangeal joint of middle finger (PIP) region.
(a)–(d) single frame images; (e)–(g) average of 15 frames. (a), (e) reflectivity (log
scale); (b), (f) retardation (color scale: 0°–90°); (c), (g) axis orientation
(color scale, −90° to +90°); (d) DOPU (color scale, 0–1), 2D DOPU window
(12(x) × 6(z) pixels or 55 × 38 µm2); (h) photo of imaged area, line
shows approximate B-scan position. Scale bar dimensions: 0.5 mm (x, geometrical distance; z, optical
distance). SC, stratum corneum; ED, epidermis; D, dermis; CLS, “column” like
structure.The reflectivity images show several layers of skin: stratum corneum (SC), epidermis, dermis, and
structures of low reflectivity, probably vessels or fat. The retardation and axis orientation images
show areas of varying retardation and axis orientation within epidermis and dermis. Interestingly,
the retardation frequently stays rather constant below the stratum corneum, giving rise to a
column-like structure in these images. It seems that the retardation has largely built up within the
superficial SC, which is therefore birefringent. The light directly backscattered by the SC is in a
random polarization state (i.e., depolarized), which is clearly observed by the random color
distribution of pixels within this layer in the retardation and axis orientation images. This can
also be observed in the DOPU image (d) which shows very low DOPU values within the SC. A similar
effect has been reported in one of our early PS-OCT studies using a time domain PS-OCT setup [35].Figure 5
shows PS-OCT images of a human nail fold. The images were taken from a 3D data set covering a
volume of 6(x) × 3(y) × 2.2(z, optical distance) mm3. Figures 5(a), 5(b), 5(c), and 5(d) are single-frame B-scans of
reflectivity, retardation, axis orientation, and DOPU, respectively. The skin (left-hand sides of
the images) shows birefringence with varying amount of retardation and axis orientation. The DOPU
image 5(d) clearly shows depolarization (low DOPU values
indicated by blue-green colors) in the SC layer, while deeper layers show a rather well-defined
polarization state. The nail plate (right-hand side of images) shows a depolarizing superficial
layer and strong birefringence (a total of three retardation oscillations) in the retardation image
5(b). The axis orientation image also shows color
oscillations which, however, are not caused by a true axis change but by the algorithm used to
calculate the axis. This algorithm causes a color jump by 90° at positions where the
retardation value passes 90° (or multiples of 90°) [18].
Fig. 5
PS-OCT images of human skin. Nail fold region. (a) reflectivity (log scale); (b) retardation
(color scale: 0°–90°); (c) axis orientation (color scale: −90° to
+90°); (d)–(f) DOPU (color scale: 0–1). (d) 2D DOPU window (16(x) × 7(z)
pixels or 96 × 44 µm2); (e) 3D DOPU window (8(x) × 4(y) ×
3(z) pixels or 48 × 48 × 19 µm3); (f) 3D DOPU window (5(x) ×
5(y) × 3(z) pixels or 30 × 60 × 19 µm3). Scale bar
dimensions: 0.5 mm (x: geometrical distance; z: optical distance). SC, stratum corneum; ED,
epidermis; D, dermis.
PS-OCT images of human skin. Nail fold region. (a) reflectivity (log scale); (b) retardation
(color scale: 0°–90°); (c) axis orientation (color scale: −90° to
+90°); (d)–(f) DOPU (color scale: 0–1). (d) 2D DOPU window (16(x) × 7(z)
pixels or 96 × 44 µm2); (e) 3D DOPU window (8(x) × 4(y) ×
3(z) pixels or 48 × 48 × 19 µm3); (f) 3D DOPU window (5(x) ×
5(y) × 3(z) pixels or 30 × 60 × 19 µm3). Scale bar
dimensions: 0.5 mm (x: geometrical distance; z: optical distance). SC, stratum corneum; ED,
epidermis; D, dermis.While in Fig. 5(d) DOPU was calculated by averaging Stokes
vector elements within a 2D evaluation window (size: 7(z) × 16(x) pixels within the B-scan),
Figs. 5(e) and 5(f)
employ 3D evaluation windows (5(e), 3(z) × 8(x)
× 4(y) pixels; 5(f), 3(z) × 5(x) × 5(y)
pixels). The use of smaller in-plane areas (3 × 8 or 3 × 5 pixels instead of 7
× 12 pixels) which is enabled by the use of 3D data sets clearly improves the resolution
within the DOPU images.Figure 6
shows PS-OCT images of a human fingertip. The images were taken from a 3D data set covering a
volume of 8(x) × 2(y) × 1.9(z, optical distance) mm3. Figures 6a, 6(b), 6(c), and 6(d) are single frame B-scans of
reflectivity, retardation, axis orientation, and DOPU, respectively. The SC is rather thick at this
region of skin and strongly depolarizing, as can be seen by the random color values observed in the
retardation and axis orientation images, as well as by the low DOPU values (Fig. 6(d)). Similar to Fig. 4,
birefringence-induced “columns” of increased retardation can be observed in the
tissues below the SC (associated with axis orientations that vary between the different
“columns”). Since colors stay essentially constant with depth, most of the retardation
is introduced within the SC. Contrary to Fig. 4, the
retardation “columns” are very narrow in Fig.
6. This disturbs the DOPU algorithm. Since transverse changes of retardation occur on a
narrow spatial scale, the polarization state varies within the DOPU evaluation window. Since the
DOPU algorithm cannot differentiate between this effect and a randomly varying polarization state
(as caused by depolarization), the DOPU image also shows vertical stripes of low DOPU (indicating
the transition zones between the different retardation “columns”). The use of 3D DOPU
windows (Fig. 6(e), window size: 6(z) × 4(x) ×
4(y) pixels; and Fig. 6(f), window size: 6(z) × 2(x)
× 6(y) pixels) improves the situation only moderately (the color value stays more in the
greenish range in these areas).
Fig. 6
PS-OCT images of human skin. Fingertip region. (a) reflectivity (log scale); (b) retardation
(color scale: 0°–90°); (c) axis orientation (color scale: −90° to
+90°); (d)–(f) DOPU (color scale: 0–1). (d) 2D DOPU window (6(x) × 12(z)
pixels or 48 × 75 µm2); (e) 3D DOPU window (4(x) × 4(y) ×
6(z) pixels or 32 × 32 × 38 µm3); (f) 3D DOPU window (2(x) ×
6(y) × 6(z) pixels or 16 × 48 × 38 µm3). Scale bar
dimensions: 0.5 mm (x: geometrical distance; z: optical distance). SC, stratum corneum;, ED,
epidermis; D, dermis; CLS, “column” like structure.
PS-OCT images of human skin. Fingertip region. (a) reflectivity (log scale); (b) retardation
(color scale: 0°–90°); (c) axis orientation (color scale: −90° to
+90°); (d)–(f) DOPU (color scale: 0–1). (d) 2D DOPU window (6(x) × 12(z)
pixels or 48 × 75 µm2); (e) 3D DOPU window (4(x) × 4(y) ×
6(z) pixels or 32 × 32 × 38 µm3); (f) 3D DOPU window (2(x) ×
6(y) × 6(z) pixels or 16 × 48 × 38 µm3). Scale bar
dimensions: 0.5 mm (x: geometrical distance; z: optical distance). SC, stratum corneum;, ED,
epidermis; D, dermis; CLS, “column” like structure.As a final example, Fig. 7
shows PS-OCT images from a scarred human skin. The scar was caused by an accident with an
angle grinder which generated a deep cut into the finger skin. It has a width of ~1.5 mm. The images
were taken from a 3D data set covering a volume of 8(x) × 2(y) × 1.6(z, optical
distance) mm3. Figures 7(a), 7(b), and 7(c) are single frame B-scans of
reflectivity, retardation, and axis orientation, respectively; Fig.
7(d) is a DOPU image where a 3D evaluation window (window size: 3(z) × 5(x) ×
5(y) pixels) was used. A Band-Aid was used to mark the rim of the scar. The Band-Aid is visible on
the right hand side of the image. It is strongly depolarizing, as seen by the polarization
scrambling in Figs. 7(b), 7(c), and in the DOPU image. The scar tissue shows areas of strong birefringence, especially
recognizable in the retardation image as an area of increased retardation oscillations. This
birefringence varies locally and is considerably stronger than that of the surrounding normal
epidermis and dermis. It probably reflects the different arrangement of collagen fibers in the area
of the scar and gives rise to varying patterns of retardation and axis orientation.
Media 1,
Media 2, and
Media 3
show fly-through movies of the 3D data set, depicting reflectivity, retardation, and axis
orientation data.
Fig. 7
PS-OCT images of human skin. Scar region; Band-Aid on right side. (a) reflectivity (log scale)
(Media 1); (b)
retardation (color scale: 0°–90°) (Media
2); (c) axis orientation (color scale: −90° to
+90°) (Media 3); (d)
DOPU (color scale: 0–1). (d) DOPU; 3D window (5(x) × 5(y) × 3(z) pixels or 40
× 40 × 19 µm3); (e) en face projection image. Scale bar dimensions:
0.5 mm (x: geometrical distance; z: optical distance).
PS-OCT images of human skin. Scar region; Band-Aid on right side. (a) reflectivity (log scale)
(Media 1); (b)
retardation (color scale: 0°–90°) (Media
2); (c) axis orientation (color scale: −90° to
+90°) (Media 3); (d)
DOPU (color scale: 0–1). (d) DOPU; 3D window (5(x) × 5(y) × 3(z) pixels or 40
× 40 × 19 µm3); (e) en face projection image. Scale bar dimensions:
0.5 mm (x: geometrical distance; z: optical distance).
4. Discussion
We have presented a new high-speed swept source PS-OCT system at 1300 nm that employs a PM FDML
laser and whose interferometer, sample-, reference-, and detection arm components are based entirely
on PM fibers. The method is adapted from our previous spectrometer based retinal PS-OCT [50] to enable dual balanced detection. A related system has
recently been reported [53] that uses a PM fiber based
interferometer in combination with bulk optics polarizing beam splitters and normal single mode (SM)
fibers. An advantage of using PM fibers throughout the system is that the use of polarization
paddles which would otherwise be needed to optimize the light power is avoided. Another advantage
lies in the use of an FDML laser with a PM cavity and a PM buffer stage. This provides a passive
polarization stabilization and thereby avoids any possible rotation or change of polarization state
over the sweep range.The PS-OCT system operates at an imaging speed of 109 kA-scans/s. One of the advantages of the
high imaging speed is the ability to record 3D data sets that are densely sampled in x and y
directions. This is of special advantage for acquisition of DOPU images. This type of image usually
has the drawback of reduced resolution because it requires averaging of Stokes vector elements
within an evaluation window that spans several pixels both in horizontal (x) and vertical (z)
directions. This is necessary to cover several independent speckles whose polarization state
distribution is measured and averaged. Fast 3D imaging allows to reduce the extension of the
evaluation window within a B-scan and instead to use a 3D window. In this way, a similar number of
independent speckles can be obtained by reducing the window extension within the B-scan (x-z) and
instead extending the window in y direction by taking information from adjacent B-scans into
account. This improves the resolution and image quality of DOPU images considerably (cf. Fig. 5). However, in case of birefringence variations on a very
narrow scale, the still limited transversal resolution can cause image artifacts (cf. Fig. 6).With a speed of 109 kA-scans/s, the technology is not yet at its limits. In fact, the buffer
stage used would also allow 4x and 8x buffering, enabling speeds beyond 400 kA-scans/s, faster FDML
lasers would enable MHz scan rates. To handle these speeds for larger 3D data sets, special
programming technologies to handle the data transfer between the DAQ on-board memory and the PC are
required which are presently under development.The main advantage of fiberized OCT systems is, apart from simpler alignment, the possibility of
coupling to flexible probes that can access parts of the human body that are inaccessible by bulk
optics systems. One of the goals of our current project will be to couple the PS-OCT engine
described in this paper to endoscopic probes. Our system should be useful for both, rigid and
flexible endoscopic probes. While it should be easily possible to couple rigid endoscopes to the PM
fiber of the sample arm of our system, not all types of flexible endoscopes are useful. Catheter
types where the sample fiber is rotated to achieve side-viewing circumferential scans [10,60] cannot be used
because of the non-rotation symmetric structure of the required PM fiber. However, probes where a
mirror at the fiber tip is rotated [61] should be equally
usable with PM fibers and therefore useful for our system.Because flexible probes induce variable bending of the PM fibers during handling, and because of
possible temperature drifts, a one-time calibration of the phase offset (which is needed for axis
orientation measurements [50]) is not stable over longer
operation times. Therefore, the measured axis orientation is only relative. While this should be
sufficient for most practical applications, continuous absolute calibration would also be possible
by placing an additional partial reflector (e.g., a glass plate) at the probe tip whose reflection
could be used for calibration monitoring. (The DOPU value should not be influenced because it
doesn’t require absolute phase values for each pixel; instead, DOPU just quantifies the
randomness of adjacent pixel values.)
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