Literature DB >> 23160923

Characterization of three new carboxylic ester hydrolases isolated by functional screening of a forest soil metagenomic library.

Sophie Biver1, Micheline Vandenbol.   

Abstract

Three new lipolytic genes were isolated from a forest soil metagenomic library by functional screening on tributyrin agar plates. The genes SBLip1, SBLip2 and SBLip5.1 respectively encode polypeptides of 445, 346 and 316 amino acids. Phylogenetic analyses revealed that SBLip2 and SBLip5.1 belong to bacterial esterase/lipase family IV, whereas SBLip1 shows similarity to class C β-lactamases and is thus related to esterase family VIII. The corresponding genes were overexpressed and their products purified by affinity chromatography for characterization. Analyses of substrate specificity with different p-nitrophenyl esters showed that all three enzymes have a preference for short-acyl-chain p-nitrophenyl esters, a feature of carboxylesterases as opposed to lipases. The β-lactamase activity of SBLip1, measured with the chromogenic substrate nitrocefin, was very low. The three esterases have the same optimal pH (pH 10) and remain active across a relatively broad pH range, displaying more than 60 % activity between pH 6 and 10. The temperature optima determined were 35 °C for SBLip1, 45 °C for SBLip2 and 50 °C for SBLip5.1. The three esterases displayed different levels of tolerance to salts, solvents and detergents, SBLip2 being overall more tolerant to high concentrations of solvent and SBLip5.1 less affected by detergents.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 23160923     DOI: 10.1007/s10295-012-1217-7

Source DB:  PubMed          Journal:  J Ind Microbiol Biotechnol        ISSN: 1367-5435            Impact factor:   3.346


  33 in total

1.  Bacterial lipolytic enzymes: classification and properties.

Authors:  J L Arpigny; K E Jaeger
Journal:  Biochem J       Date:  1999-10-01       Impact factor: 3.857

2.  Approaches for deciphering the structural basis of low temperature enzyme activity.

Authors:  P P Sheridan; N Panasik; J M Coombs; J E Brenchley
Journal:  Biochim Biophys Acta       Date:  2000-12-29

3.  Improved prediction of signal peptides: SignalP 3.0.

Authors:  Jannick Dyrløv Bendtsen; Henrik Nielsen; Gunnar von Heijne; Søren Brunak
Journal:  J Mol Biol       Date:  2004-07-16       Impact factor: 5.469

4.  Isolation of novel lipolytic genes from uncultured bacteria of pond water.

Authors:  Ravi Ranjan; Amit Grover; Raj Kishor Kapardar; Rakesh Sharma
Journal:  Biochem Biophys Res Commun       Date:  2005-09-16       Impact factor: 3.575

5.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Authors:  Koichiro Tamura; Daniel Peterson; Nicholas Peterson; Glen Stecher; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

6.  EstB from Burkholderia gladioli: a novel esterase with a beta-lactamase fold reveals steric factors to discriminate between esterolytic and beta-lactam cleaving activity.

Authors:  Ulrike G Wagner; Evamaria I Petersen; Helmut Schwab; Christoph Kratky
Journal:  Protein Sci       Date:  2002-03       Impact factor: 6.725

7.  A new carboxylesterase from Brevibacterium linens IFO 12171 responsible for the conversion of 1,4-butanediol diacrylate to 4-hydroxybutyl acrylate: purification, characterization, gene cloning, and gene expression in Escherichia coli.

Authors:  Y Sakai; J Ishikawa; S Fukasaka; H Yurimoto; R Mitsui; H Yanase; N Kato
Journal:  Biosci Biotechnol Biochem       Date:  1999-04       Impact factor: 2.043

8.  Characterization of a new β-glucosidase/β-xylosidase from the gut microbiota of the termite (Reticulitermes santonensis).

Authors:  Christel Mattéotti; Eric Haubruge; Philippe Thonart; Frédéric Francis; Edwin De Pauw; Daniel Portetelle; Micheline Vandenbol
Journal:  FEMS Microbiol Lett       Date:  2010-11-26       Impact factor: 2.742

9.  Identification of novel lipolytic genes and gene families by screening of metagenomic libraries derived from soil samples of the German Biodiversity Exploratories.

Authors:  Heiko Nacke; Christiane Will; Sarah Herzog; Boris Nowka; Martin Engelhaupt; Rolf Daniel
Journal:  FEMS Microbiol Ecol       Date:  2011-04-06       Impact factor: 4.194

10.  Hormone-sensitive lipase is closely related to several bacterial proteins, and distantly related to acetylcholinesterase and lipoprotein lipase: identification of a superfamily of esterases and lipases.

Authors:  H Hemilä; T T Koivula; I Palva
Journal:  Biochim Biophys Acta       Date:  1994-01-03
View more
  11 in total

1.  Characterization of Novel Family IV Esterase and Family I.3 Lipase from an Oil-Polluted Mud Flat Metagenome.

Authors:  Hee Jung Kim; Yu Seok Jeong; Won Kyeong Jung; Sung Kyum Kim; Hyun Woo Lee; Hyung-Yeel Kahng; Jungho Kim; Hoon Kim
Journal:  Mol Biotechnol       Date:  2015-09       Impact factor: 2.695

2.  Identification and characterization of a halotolerant, cold-active marine endo-β-1,4-glucanase by using functional metagenomics of seaweed-associated microbiota.

Authors:  Marjolaine Martin; Sophie Biver; Sébastien Steels; Tristan Barbeyron; Murielle Jam; Daniel Portetelle; Gurvan Michel; Micheline Vandenbol
Journal:  Appl Environ Microbiol       Date:  2014-06-06       Impact factor: 4.792

3.  Two promising alkaline β-glucosidases isolated by functional metagenomics from agricultural soil, including one showing high tolerance towards harsh detergents, oxidants and glucose.

Authors:  Sophie Biver; Aurore Stroobants; Daniel Portetelle; Micheline Vandenbol
Journal:  J Ind Microbiol Biotechnol       Date:  2014-01-12       Impact factor: 3.346

4.  Metagenomic Screening for Lipolytic Genes Reveals an Ecology-Clustered Distribution Pattern.

Authors:  Mingji Lu; Dominik Schneider; Rolf Daniel
Journal:  Front Microbiol       Date:  2022-06-10       Impact factor: 6.064

5.  Isolation and characterization of a thermostable esterase from a metagenomic library.

Authors:  Hua Shao; Li Xu; Yunjun Yan
Journal:  J Ind Microbiol Biotechnol       Date:  2013-08-11       Impact factor: 3.346

6.  Est10: A Novel Alkaline Esterase Isolated from Bovine Rumen Belonging to the New Family XV of Lipolytic Enzymes.

Authors:  María Cecilia Rodríguez; Inés Loaces; Vanesa Amarelle; Daniella Senatore; Andrés Iriarte; Elena Fabiano; Francisco Noya
Journal:  PLoS One       Date:  2015-05-14       Impact factor: 3.240

Review 7.  Biotechnological applications of functional metagenomics in the food and pharmaceutical industries.

Authors:  Laura M Coughlan; Paul D Cotter; Colin Hill; Avelino Alvarez-Ordóñez
Journal:  Front Microbiol       Date:  2015-06-30       Impact factor: 5.640

8.  Characterization of a new oxidant-stable serine protease isolated by functional metagenomics.

Authors:  Sophie Biver; Daniel Portetelle; Micheline Vandenbol
Journal:  Springerplus       Date:  2013-08-28

9.  Metagenomics of an Alkaline Hot Spring in Galicia (Spain): Microbial Diversity Analysis and Screening for Novel Lipolytic Enzymes.

Authors:  Olalla López-López; Kamila Knapik; Maria-Esperanza Cerdán; María-Isabel González-Siso
Journal:  Front Microbiol       Date:  2015-11-20       Impact factor: 5.640

10.  Characterization of a novel family VIII esterase EstM2 from soil metagenome capable of hydrolyzing estrogenic phthalates.

Authors:  Jayita Sarkar; Arindam Dutta; Piyali Pal Chowdhury; Joydeep Chakraborty; Tapan K Dutta
Journal:  Microb Cell Fact       Date:  2020-03-24       Impact factor: 5.328

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.