Literature DB >> 23154808

Evolution of genetic and genomic features unique to the human lineage.

Majesta O'Bleness1, Veronica B Searles, Ajit Varki, Pascal Gagneux, James M Sikela.   

Abstract

Given the unprecedented tools that are now available for rapidly comparing genomes, the identification and study of genetic and genomic changes that are unique to our species have accelerated, and we are entering a golden age of human evolutionary genomics. Here we provide an overview of these efforts, highlighting important recent discoveries, examples of the different types of human-specific genomic and genetic changes identified, and salient trends, such as the localization of evolutionary adaptive changes to complex loci that are highly enriched for disease associations. Finally, we discuss the remaining challenges, such as the incomplete nature of current genome sequence assemblies and difficulties in linking human-specific genomic changes to human-specific phenotypic traits.

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Year:  2012        PMID: 23154808      PMCID: PMC4097811          DOI: 10.1038/nrg3336

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  127 in total

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Authors:  Sandra Ciesek; Sandra Westhaus; Melanie Wicht; Ilka Wappler; Sylvana Henschen; Christoph Sarrazin; Nabila Hamdi; Ahmed I Abdelaziz; Christian P Strassburg; Heiner Wedemeyer; Michael P Manns; Thomas Pietschmann; Thomas von Hahn
Journal:  J Virol       Date:  2011-06-01       Impact factor: 5.103

2.  Climate change and evolving human diversity in Europe during the last glacial.

Authors:  Clive Gamble; William Davies; Paul Pettitt; Martin Richards
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-02-29       Impact factor: 6.237

3.  Detection of two distinct forms of apoC-I in great apes.

Authors:  Donald L Puppione; Christopher M Ryan; Sara Bassilian; Puneet Souda; Xinshu Xiao; Oliver A Ryder; Julian P Whitelegge
Journal:  Comp Biochem Physiol Part D Genomics Proteomics       Date:  2010-03       Impact factor: 2.674

4.  Non-syndromic language delay in a child with disruption in the Protocadherin11X/Y gene pair.

Authors:  Marsha D Speevak; Sandra A Farrell
Journal:  Am J Med Genet B Neuropsychiatr Genet       Date:  2011-04-07       Impact factor: 3.568

5.  Increased cortical expression of two synaptogenic thrombospondins in human brain evolution.

Authors:  Mario Cáceres; Carolyn Suwyn; Marcelia Maddox; James W Thomas; Todd M Preuss
Journal:  Cereb Cortex       Date:  2006-12-20       Impact factor: 5.357

6.  Sex-specific and lineage-specific alternative splicing in primates.

Authors:  Ran Blekhman; John C Marioni; Paul Zumbo; Matthew Stephens; Yoav Gilad
Journal:  Genome Res       Date:  2009-12-15       Impact factor: 9.043

7.  Phosphorylation of p85 beta PIX, a Rac/Cdc42-specific guanine nucleotide exchange factor, via the Ras/ERK/PAK2 pathway is required for basic fibroblast growth factor-induced neurite outgrowth.

Authors:  Eun-Young Shin; Kyung-Sun Shin; Chan-Soo Lee; Kyung-Nam Woo; Song-Hua Quan; Nak-Kyun Soung; Young Gyu Kim; Choong Ik Cha; Seung-Ryul Kim; Dongeun Park; Gary M Bokoch; Eung-Gook Kim
Journal:  J Biol Chem       Date:  2002-09-10       Impact factor: 5.157

8.  Adaptive evolution of ASPM, a major determinant of cerebral cortical size in humans.

Authors:  Patrick D Evans; Jeffrey R Anderson; Eric J Vallender; Sandra L Gilbert; Christine M Malcom; Steve Dorus; Bruce T Lahn
Journal:  Hum Mol Genet       Date:  2004-01-13       Impact factor: 6.150

9.  Myosin gene mutation correlates with anatomical changes in the human lineage.

Authors:  Hansell H Stedman; Benjamin W Kozyak; Anthony Nelson; Danielle M Thesier; Leonard T Su; David W Low; Charles R Bridges; Joseph B Shrager; Nancy Minugh-Purvis; Marilyn A Mitchell
Journal:  Nature       Date:  2004-03-25       Impact factor: 49.962

10.  Heart disease is common in humans and chimpanzees, but is caused by different pathological processes.

Authors:  Nissi Varki; Dan Anderson; James G Herndon; Tho Pham; Christopher J Gregg; Monica Cheriyan; James Murphy; Elizabeth Strobert; Jo Fritz; James G Else; Ajit Varki
Journal:  Evol Appl       Date:  2009-02       Impact factor: 5.183

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  62 in total

1.  Endless paces of degeneration--applying comparative genomics to study evolution's moulding of longevity.

Authors:  João Pedro de Magalhães; Michael Kean
Journal:  EMBO Rep       Date:  2013-07-12       Impact factor: 8.807

2.  Primate genome architecture influences structural variation mechanisms and functional consequences.

Authors:  Omer Gokcumen; Verena Tischler; Jelena Tica; Qihui Zhu; Rebecca C Iskow; Eunjung Lee; Markus Hsi-Yang Fritz; Amy Langdon; Adrian M Stütz; Pavlos Pavlidis; Vladimir Benes; Ryan E Mills; Peter J Park; Charles Lee; Jan O Korbel
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-06       Impact factor: 11.205

Review 3.  Evolution of the Human Nervous System Function, Structure, and Development.

Authors:  André M M Sousa; Kyle A Meyer; Gabriel Santpere; Forrest O Gulden; Nenad Sestan
Journal:  Cell       Date:  2017-07-13       Impact factor: 41.582

4.  Replicated linear association between DUF1220 copy number and severity of social impairment in autism.

Authors:  J M Davis; V B Searles Quick; J M Sikela
Journal:  Hum Genet       Date:  2015-03-11       Impact factor: 4.132

5.  The genome, microbiome and evolutionary medicine.

Authors:  Robert C Brunham
Journal:  CMAJ       Date:  2018-02-12       Impact factor: 8.262

6.  Mice engrafted with human hematopoietic stem cells support a human myeloid cell inflammatory response in vivo.

Authors:  Andrew Baird; Chenliang Deng; Matthew H Eliceiri; Fatima Haghi; Xitong Dang; Raul Coimbra; Todd W Costantini; Bruce E Torbett; Brian P Eliceiri
Journal:  Wound Repair Regen       Date:  2016-10-04       Impact factor: 3.617

7.  Potential role of human-specific genes, human-specific microRNAs and human-specific non-coding regulatory RNAs in the pathogenesis of systemic sclerosis and Sjögren's syndrome.

Authors:  Sergio A Jimenez; Sonsoles Piera-Velazquez
Journal:  Autoimmun Rev       Date:  2013-05-15       Impact factor: 9.754

Review 8.  The evolution of the human genome.

Authors:  Corinne N Simonti; John A Capra
Journal:  Curr Opin Genet Dev       Date:  2015-09-09       Impact factor: 5.578

Review 9.  New genes contribute to genetic and phenotypic novelties in human evolution.

Authors:  Yong E Zhang; Manyuan Long
Journal:  Curr Opin Genet Dev       Date:  2014-09-16       Impact factor: 5.578

Review 10.  Why primate models matter.

Authors:  Kimberley A Phillips; Karen L Bales; John P Capitanio; Alan Conley; Paul W Czoty; Bert A 't Hart; William D Hopkins; Shiu-Lok Hu; Lisa A Miller; Michael A Nader; Peter W Nathanielsz; Jeffrey Rogers; Carol A Shively; Mary Lou Voytko
Journal:  Am J Primatol       Date:  2014-04-10       Impact factor: 2.371

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