Literature DB >> 25758905

Replicated linear association between DUF1220 copy number and severity of social impairment in autism.

J M Davis1, V B Searles Quick, J M Sikela.   

Abstract

Sequences encoding DUF1220 protein domains exhibit an exceptional human-specific increase in copy number and have been associated with several phenotypes related to brain size. Autism is a highly heritable and heterogeneous condition characterized behaviorally by social and communicative impairments, and increased repetitive and stereotyped behavior. Given the accelerated brain growth pattern observed in many individuals with autism, and the association between DUF1220 subtype CON1 copy number and brain size, we previously investigated associations between CON1 copy number and autism-related symptoms. We determined that CON1 copy number increase is associated with increasing severity of all three behavioral features of autism. The present study sought to replicate these findings in an independent population (N = 166). Our results demonstrate a replication of the linear relationship between CON1 copy number and the severity of social impairment in individuals with autism as measured by Autism Diagnostic Interview-Revised Social Diagnostic Score, such that with each additional copy of CON1 Social Diagnostic Score increased 0.24 points (SE = 0.11, p = 0.036). We also identified an analogous trend between CON1 copy number and Communicative Diagnostic Score, but did not replicate the relationship between CON1 copy number and Repetitive Behavior Diagnostic Score. Interestingly, these associations appear to be most pronounced in multiplex children. These results, representing the first replication of a gene dosage relationship with the severity of a primary symptom of autism, lend further support to the possibility that the same protein domain family implicated in the evolutionary expansion of the human brain may also be involved in autism severity.

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Year:  2015        PMID: 25758905      PMCID: PMC5886748          DOI: 10.1007/s00439-015-1537-6

Source DB:  PubMed          Journal:  Hum Genet        ISSN: 0340-6717            Impact factor:   4.132


  40 in total

1.  IQ in children with autism spectrum disorders: data from the Special Needs and Autism Project (SNAP).

Authors:  T Charman; A Pickles; E Simonoff; S Chandler; T Loucas; G Baird
Journal:  Psychol Med       Date:  2011-03       Impact factor: 7.723

2.  Neuron number and size in prefrontal cortex of children with autism.

Authors:  Eric Courchesne; Peter R Mouton; Michael E Calhoun; Katerina Semendeferi; Clelia Ahrens-Barbeau; Melodie J Hallet; Cynthia Carter Barnes; Karen Pierce
Journal:  JAMA       Date:  2011-11-09       Impact factor: 56.272

3.  DUF1220 protein domains drive proliferation in human neural stem cells and are associated with increased cortical volume in anthropoid primates.

Authors:  J G Keeney; J M Davis; J Siegenthaler; M D Post; B S Nielsen; W D Hopkins; J M Sikela
Journal:  Brain Struct Funct       Date:  2014-06-25       Impact factor: 3.270

4.  Head circumference and height in autism: a study by the Collaborative Program of Excellence in Autism.

Authors:  Janet E Lainhart; Erin D Bigler; Maureen Bocian; Hilary Coon; Elena Dinh; Geraldine Dawson; Curtis K Deutsch; Michelle Dunn; Annette Estes; Helen Tager-Flusberg; Susan Folstein; Susan Hepburn; Susan Hyman; William McMahon; Nancy Minshew; Jeff Munson; Kathy Osann; Sally Ozonoff; Patricia Rodier; Sally Rogers; Marian Sigman; M Anne Spence; Christopher J Stodgell; Fred Volkmar
Journal:  Am J Med Genet A       Date:  2006-11-01       Impact factor: 2.802

5.  Strong association of de novo copy number mutations with autism.

Authors:  Jonathan Sebat; B Lakshmi; Dheeraj Malhotra; Jennifer Troge; Christa Lese-Martin; Tom Walsh; Boris Yamrom; Seungtai Yoon; Alex Krasnitz; Jude Kendall; Anthony Leotta; Deepa Pai; Ray Zhang; Yoon-Ha Lee; James Hicks; Sarah J Spence; Annette T Lee; Kaija Puura; Terho Lehtimäki; David Ledbetter; Peter K Gregersen; Joel Bregman; James S Sutcliffe; Vaidehi Jobanputra; Wendy Chung; Dorothy Warburton; Mary-Claire King; David Skuse; Daniel H Geschwind; T Conrad Gilliam; Kenny Ye; Michael Wigler
Journal:  Science       Date:  2007-03-15       Impact factor: 47.728

6.  The level and nature of autistic intelligence.

Authors:  Michelle Dawson; Isabelle Soulières; Morton Ann Gernsbacher; Laurent Mottron
Journal:  Psychol Sci       Date:  2007-08

7.  Recurrent reciprocal 1q21.1 deletions and duplications associated with microcephaly or macrocephaly and developmental and behavioral abnormalities.

Authors:  Nicola Brunetti-Pierri; Jonathan S Berg; Fernando Scaglia; John Belmont; Carlos A Bacino; Trilochan Sahoo; Seema R Lalani; Brett Graham; Brendan Lee; Marwan Shinawi; Joseph Shen; Sung-Hae L Kang; Amber Pursley; Timothy Lotze; Gail Kennedy; Susan Lansky-Shafer; Christine Weaver; Elizabeth R Roeder; Theresa A Grebe; Georgianne L Arnold; Terry Hutchison; Tyler Reimschisel; Stephen Amato; Michael T Geragthy; Jeffrey W Innis; Ewa Obersztyn; Beata Nowakowska; Sally S Rosengren; Patricia I Bader; Dorothy K Grange; Sayed Naqvi; Adolfo D Garnica; Saunder M Bernes; Chin-To Fong; Anne Summers; W David Walters; James R Lupski; Pawel Stankiewicz; Sau Wai Cheung; Ankita Patel
Journal:  Nat Genet       Date:  2008-12       Impact factor: 38.330

8.  Inferring polymorphism-induced regulatory gene networks active in human lymphocyte cell lines by weighted linear mixed model analysis of multiple RNA-Seq datasets.

Authors:  Wensheng Zhang; Andrea Edwards; Erik K Flemington; Kun Zhang
Journal:  PLoS One       Date:  2013-10-30       Impact factor: 3.240

9.  Association testing of copy number variants in schizophrenia and autism spectrum disorders.

Authors:  Bernard J Crespi; Helen J Crofts
Journal:  J Neurodev Disord       Date:  2012-05-30       Impact factor: 4.025

10.  The case for DUF1220 domain dosage as a primary contributor to anthropoid brain expansion.

Authors:  Jonathon G Keeney; Laura Dumas; James M Sikela
Journal:  Front Hum Neurosci       Date:  2014-06-24       Impact factor: 3.169

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  10 in total

1.  The Driver of Extreme Human-Specific Olduvai Repeat Expansion Remains Highly Active in the Human Genome.

Authors:  Ilea E Heft; Yulia Mostovoy; Michal Levy-Sakin; Walfred Ma; Aaron J Stevens; Steven Pastor; Jennifer McCaffrey; Dario Boffelli; David I Martin; Ming Xiao; Martin A Kennedy; Pui-Yan Kwok; James M Sikela
Journal:  Genetics       Date:  2019-11-21       Impact factor: 4.562

2.  Solution NMR backbone assignment reveals interaction-free tumbling of human lineage-specific Olduvai protein domains.

Authors:  Aaron Issaian; Lauren Schmitt; Alexandra Born; Parker J Nichols; James Sikela; Kirk Hansen; Beat Vögeli; Morkos A Henen
Journal:  Biomol NMR Assign       Date:  2019-07-01       Impact factor: 0.746

Review 3.  Human Accelerated Regions and Other Human-Specific Sequence Variations in the Context of Evolution and Their Relevance for Brain Development.

Authors:  Anastasia Levchenko; Alexander Kanapin; Anastasia Samsonova; Raul R Gainetdinov
Journal:  Genome Biol Evol       Date:  2018-01-01       Impact factor: 3.416

4.  Changing the name of the NBPF/DUF1220 domain to the Olduvai domain.

Authors:  James M Sikela; Frans van Roy
Journal:  F1000Res       Date:  2017-12-28

5.  High resolution measurement of DUF1220 domain copy number from whole genome sequence data.

Authors:  David P Astling; Ilea E Heft; Kenneth L Jones; James M Sikela
Journal:  BMC Genomics       Date:  2017-08-14       Impact factor: 3.969

6.  Paired involvement of human-specific Olduvai domains and NOTCH2NL genes in human brain evolution.

Authors:  Ian T Fiddes; Alex A Pollen; Jonathan M Davis; James M Sikela
Journal:  Hum Genet       Date:  2019-05-13       Impact factor: 4.132

7.  Selection of Olduvai Domains during Evolution: A Role for Primate-Specific Splicing Super-Enhancer and RNA Guanine Quadruplex in Bipartite NBPF Exons.

Authors:  Igor Vořechovský
Journal:  Brain Sci       Date:  2022-06-30

8.  Global diversity, population stratification, and selection of human copy-number variation.

Authors:  Peter H Sudmant; Swapan Mallick; Bradley J Nelson; Fereydoun Hormozdiari; Niklas Krumm; John Huddleston; Bradley P Coe; Carl Baker; Susanne Nordenfelt; Michael Bamshad; Lynn B Jorde; Olga L Posukh; Hovhannes Sahakyan; W Scott Watkins; Levon Yepiskoposyan; M Syafiq Abdullah; Claudio M Bravi; Cristian Capelli; Tor Hervig; Joseph T S Wee; Chris Tyler-Smith; George van Driem; Irene Gallego Romero; Aashish R Jha; Sena Karachanak-Yankova; Draga Toncheva; David Comas; Brenna Henn; Toomas Kivisild; Andres Ruiz-Linares; Antti Sajantila; Ene Metspalu; Jüri Parik; Richard Villems; Elena B Starikovskaya; George Ayodo; Cynthia M Beall; Anna Di Rienzo; Michael F Hammer; Rita Khusainova; Elza Khusnutdinova; William Klitz; Cheryl Winkler; Damian Labuda; Mait Metspalu; Sarah A Tishkoff; Stanislav Dryomov; Rem Sukernik; Nick Patterson; David Reich; Evan E Eichler
Journal:  Science       Date:  2015-08-06       Impact factor: 47.728

9.  DUF1220 copy number is associated with schizophrenia risk and severity: implications for understanding autism and schizophrenia as related diseases.

Authors:  V B Searles Quick; J M Davis; A Olincy; J M Sikela
Journal:  Transl Psychiatry       Date:  2015-12-15       Impact factor: 6.222

10.  Genomic trade-offs: are autism and schizophrenia the steep price of the human brain?

Authors:  J M Sikela; V B Searles Quick
Journal:  Hum Genet       Date:  2018-01-15       Impact factor: 4.132

  10 in total

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