Literature DB >> 23150672

The first structure of polarity suppression protein, Psu from enterobacteria phage P4, reveals a novel fold and a knotted dimer.

Ramanuj Banerjee1, Seema Nath, Amitabh Ranjan, Susmita Khamrui, Bibhusita Pani, Ranjan Sen, Udayaditya Sen.   

Abstract

Psu is a capsid decoration protein of bacteriophage P4 and acts as an antiterminator of Rho-dependent transcription termination in bacteria. So far, no structures have been reported for the Psu protein or its homologues. Here, we report the first structure of Psu solved by the Hg(2+) single wavelength anomalous dispersion method, which reveals that Psu exists as a knotted homodimer and is first of its kind in nature. Each monomer of Psu attains a novel fold around a tight coiled-coil motif. CD spectroscopy and the structure of an engineered disulfide-bridged Psu derivative reveal that the protein folds reversibly and reassembles by itself into the knotted dimeric conformation without the requirement of any chaperone. This structure would help to explain the functional properties of the protein and can be used as a template to design a minimal peptide fragment that can be used as a drug against Rho-dependent transcription termination in bacteria.

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Year:  2012        PMID: 23150672      PMCID: PMC3531781          DOI: 10.1074/jbc.M112.423202

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  22 in total

1.  TopDraw: a sketchpad for protein structure topology cartoons.

Authors:  Charles S Bond
Journal:  Bioinformatics       Date:  2003-01-22       Impact factor: 6.937

2.  MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes.

Authors:  Ian W Davis; Laura Weston Murray; Jane S Richardson; David C Richardson
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

3.  Improved methods for building protein models in electron density maps and the location of errors in these models.

Authors:  T A Jones; J Y Zou; S W Cowan; M Kjeldgaard
Journal:  Acta Crystallogr A       Date:  1991-03-01       Impact factor: 2.290

4.  Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions.

Authors:  E Krissinel; K Henrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

5.  Mechanism of inhibition of Rho-dependent transcription termination by bacteriophage P4 protein Psu.

Authors:  Bibhusita Pani; Sharmistha Banerjee; Jisha Chalissery; Abishek Muralimohan; Muralimohan Abishek; Ramya Malarini Loganathan; Ragan Babu Suganthan; Ranjan Sen
Journal:  J Biol Chem       Date:  2006-07-07       Impact factor: 5.157

Review 6.  3D domain swapping: a mechanism for oligomer assembly.

Authors:  M J Bennett; M P Schlunegger; D Eisenberg
Journal:  Protein Sci       Date:  1995-12       Impact factor: 6.725

7.  Influence of a knot on the strength of a polymer strand.

Authors:  A M Saitta; P D Soper; E Wasserman; M L Klein
Journal:  Nature       Date:  1999-05-06       Impact factor: 49.962

8.  iMOSFLM: a new graphical interface for diffraction-image processing with MOSFLM.

Authors:  T Geoff G Battye; Luke Kontogiannis; Owen Johnson; Harold R Powell; Andrew G W Leslie
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

9.  NOMAD-Ref: visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis.

Authors:  Erik Lindahl; Cyril Azuara; Patrice Koehl; Marc Delarue
Journal:  Nucleic Acids Res       Date:  2006-07-01       Impact factor: 16.971

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  11 in total

1.  A Bacteriophage Capsid Protein Is an Inhibitor of a Conserved Transcription Terminator of Various Bacterial Pathogens.

Authors:  Gairika Ghosh; Jayavardhana Reddy; Susmit Sambhare; Ranjan Sen
Journal:  J Bacteriol       Date:  2017-12-05       Impact factor: 3.490

2.  Exploiting phage strategies to modulate bacterial transcription.

Authors:  Markus C Wahl; Ranjan Sen
Journal:  Transcription       Date:  2019-10-30

Review 3.  Bacteriophage Capsid Modification by Genetic and Chemical Methods.

Authors:  Caitlin M Carmody; Julie M Goddard; Sam R Nugen
Journal:  Bioconjug Chem       Date:  2021-03-04       Impact factor: 4.774

4.  High affinity anchoring of the decoration protein pb10 onto the bacteriophage T5 capsid.

Authors:  Emeline Vernhes; Madalena Renouard; Bernard Gilquin; Philippe Cuniasse; Dominique Durand; Patrick England; Sylviane Hoos; Alexis Huet; James F Conway; Anatoly Glukhov; Vladimir Ksenzenko; Eric Jacquet; Naïma Nhiri; Sophie Zinn-Justin; Pascale Boulanger
Journal:  Sci Rep       Date:  2017-02-06       Impact factor: 4.379

5.  The phage L capsid decoration protein has a novel OB-fold and an unusual capsid binding strategy.

Authors:  Rebecca L Newcomer; Jason R Schrad; Eddie B Gilcrease; Sherwood R Casjens; Michael Feig; Carolyn M Teschke; Andrei T Alexandrescu; Kristin N Parent
Journal:  Elife       Date:  2019-04-04       Impact factor: 8.140

Review 6.  Keeping It Together: Structures, Functions, and Applications of Viral Decoration Proteins.

Authors:  Corynne L Dedeo; Carolyn M Teschke; Andrei T Alexandrescu
Journal:  Viruses       Date:  2020-10-14       Impact factor: 5.048

7.  Structure of the Capsid Size-Determining Scaffold of "Satellite" Bacteriophage P4.

Authors:  James L Kizziah; Cynthia M Rodenburg; Terje Dokland
Journal:  Viruses       Date:  2020-08-27       Impact factor: 5.048

8.  Structural and mechanistic basis of anti-termination of Rho-dependent transcription termination by bacteriophage P4 capsid protein Psu.

Authors:  Amitabh Ranjan; Savita Sharma; Ramanuj Banerjee; Udayaditya Sen; Ranjan Sen
Journal:  Nucleic Acids Res       Date:  2013-05-22       Impact factor: 16.971

9.  The moonlighting function of bacteriophage P4 capsid protein, Psu, as a transcription antiterminator.

Authors:  Amitabh Ranjan; Ramanuj Banerjee; Bibhusita Pani; Udayditya Sen; Ranjan Sen
Journal:  Bacteriophage       Date:  2013-04-01

10.  Structures of Three Actinobacteriophage Capsids: Roles of Symmetry and Accessory Proteins.

Authors:  Jennifer Podgorski; Joshua Calabrese; Lauren Alexandrescu; Deborah Jacobs-Sera; Welkin Pope; Graham Hatfull; Simon White
Journal:  Viruses       Date:  2020-03-08       Impact factor: 5.048

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