Literature DB >> 16829521

Mechanism of inhibition of Rho-dependent transcription termination by bacteriophage P4 protein Psu.

Bibhusita Pani1, Sharmistha Banerjee, Jisha Chalissery, Abishek Muralimohan, Muralimohan Abishek, Ramya Malarini Loganathan, Ragan Babu Suganthan, Ranjan Sen.   

Abstract

Psu, a coat protein from bacteriophage P4, has been shown to inhibit Rho-dependent transcription termination in vivo. Co-overexpression of Psu and Rho led to the loss of viability of the cells, which is the consequence of the anti-Rho activity of the protein. The antitermination property of Psu is abolished either by the deletion of 10 or 20 amino acids from its C terminus or by a mutation, Y80C, in Rho. All these experiments indicated probable interactions between Rho and Psu. Purified Psu protein is alpha-helical in nature and appeared to be a dimer. Co-purification of Rho and wild-type Psu on an affinity matrix and co-elution of both of them in Superose-6 gel filtration suggests a direct association of these proteins, whereas a C terminus 10-amino acid deletion derivative of Psu failed to be pulled down in this assay. This indicates that the loss of the function of these mutants is correlated with their inability to interact with each other. In vitro termination assays revealed that Psu can inhibit Rho-dependent termination specifically in a concentration-dependent manner. The presence of Psu affected the affinity of ATP and reduced the rate of ATPase activity of Rho but did not affect either primary or secondary RNA binding activities. In the presence of Psu, Rho was also observed to release RNA very slowly from a stalled elongation complex. We propose that Psu inhibits Rho-dependent termination by slowing down the translocation of Rho along the RNA because of its slow ATPase activity.

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Year:  2006        PMID: 16829521      PMCID: PMC1950596          DOI: 10.1074/jbc.M603982200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  29 in total

1.  Mutational changes of conserved residues in the Q-loop region of transcription factor Rho greatly reduce secondary site RNA-binding.

Authors:  R R Wei; J P Richardson
Journal:  J Mol Biol       Date:  2001-12-14       Impact factor: 5.469

Review 2.  Rho-dependent termination and ATPases in transcript termination.

Authors:  John P Richardson
Journal:  Biochim Biophys Acta       Date:  2002-09-13

3.  Structural and functional dissections of transcription termination factor rho by random mutagenesis.

Authors:  Y Miwa; T Horiguchi; K Shigesada
Journal:  J Mol Biol       Date:  1995-12-15       Impact factor: 5.469

Review 4.  Processive antitermination.

Authors:  R A Weisberg; M E Gottesman
Journal:  J Bacteriol       Date:  1999-01       Impact factor: 3.490

5.  Purification of transcription termination factor Rho from Escherichia coli and Micrococcus luteus.

Authors:  W Nowatzke; L Richardson; J P Richardson
Journal:  Methods Enzymol       Date:  1996       Impact factor: 1.600

6.  Capsid localization of the bacteriophage P4 Psu protein.

Authors:  T Dokland; M L Isaksen; S D Fuller; B H Lindqvist
Journal:  Virology       Date:  1993-06       Impact factor: 3.616

7.  In vivo and in vitro evidence for an anti-Rho activity induced by the phage P4 polarity suppressor protein Psu.

Authors:  N A Linderoth; G Tang; R Calendar
Journal:  Virology       Date:  1997-01-06       Impact factor: 3.616

8.  The antibiotic bicyclomycin affects the secondary RNA binding site of Escherichia coli transcription termination factor Rho.

Authors:  A Magyar; X Zhang; H Kohn; W R Widger
Journal:  J Biol Chem       Date:  1996-10-11       Impact factor: 5.157

9.  A mutation in the ATP binding domain of rho alters its RNA binding properties and uncouples ATP hydrolysis from helicase activity.

Authors:  S Pereira; T Platt
Journal:  J Biol Chem       Date:  1995-12-22       Impact factor: 5.157

10.  Mutational analysis and secondary structure model of the RNP1-like sequence motif of transcription termination factor Rho.

Authors:  A Martinez; T Opperman; J P Richardson
Journal:  J Mol Biol       Date:  1996-04-19       Impact factor: 5.469

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  18 in total

1.  Transcription Elongation Factor NusA Is a General Antagonist of Rho-dependent Termination in Escherichia coli.

Authors:  M Zuhaib Qayyum; Debashish Dey; Ranjan Sen
Journal:  J Biol Chem       Date:  2016-02-12       Impact factor: 5.157

2.  The Sm-like RNA chaperone Hfq mediates transcription antitermination at Rho-dependent terminators.

Authors:  Makhlouf Rabhi; Olivier Espéli; Annie Schwartz; Bastien Cayrol; A Rachid Rahmouni; Véronique Arluison; Marc Boudvillain
Journal:  EMBO J       Date:  2011-06-14       Impact factor: 11.598

3.  Crystallization and preliminary X-ray analysis of Psu, an inhibitor of the bacterial transcription terminator Rho.

Authors:  Susmita Khamrui; Amitabh Ranjan; Bibhusita Pani; Ranjan Sen; Udayaditya Sen
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-01-28

Review 4.  Mastering the control of the Rho transcription factor for biotechnological applications.

Authors:  Tomás G Villa; Ana G Abril; Angeles Sánchez-Pérez
Journal:  Appl Microbiol Biotechnol       Date:  2021-05-08       Impact factor: 4.813

Review 5.  Tuning the sequence specificity of a transcription terminator.

Authors:  Michael R Lawson; James M Berger
Journal:  Curr Genet       Date:  2019-02-09       Impact factor: 3.886

Review 6.  Transcription termination factor Rho and microbial phenotypic heterogeneity.

Authors:  Elena Bidnenko; Vladimir Bidnenko
Journal:  Curr Genet       Date:  2017-11-01       Impact factor: 3.886

7.  The complete genomes of Staphylococcus aureus bacteriophages 80 and 80α--implications for the specificity of SaPI mobilization.

Authors:  G E Christie; A M Matthews; D G King; K D Lane; N P Olivarez; S M Tallent; S R Gill; R P Novick
Journal:  Virology       Date:  2010-09-25       Impact factor: 3.616

8.  A Bacteriophage Capsid Protein Is an Inhibitor of a Conserved Transcription Terminator of Various Bacterial Pathogens.

Authors:  Gairika Ghosh; Jayavardhana Reddy; Susmit Sambhare; Ranjan Sen
Journal:  J Bacteriol       Date:  2017-12-05       Impact factor: 3.490

9.  The first structure of polarity suppression protein, Psu from enterobacteria phage P4, reveals a novel fold and a knotted dimer.

Authors:  Ramanuj Banerjee; Seema Nath; Amitabh Ranjan; Susmita Khamrui; Bibhusita Pani; Ranjan Sen; Udayaditya Sen
Journal:  J Biol Chem       Date:  2012-11-12       Impact factor: 5.157

10.  Exploiting phage strategies to modulate bacterial transcription.

Authors:  Markus C Wahl; Ranjan Sen
Journal:  Transcription       Date:  2019-10-30
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