Literature DB >> 12538265

TopDraw: a sketchpad for protein structure topology cartoons.

Charles S Bond1.   

Abstract

SUMMARY: Protein topology cartoons are a representation of structural data commonly used by structural biologists to illustrate the relationship between one-dimensional sequence and three-dimensional structural data in a convenient two-dimensional format. TopDraw is a simple, freely available TCL/Tk based drawing program designed specifically for the production of publication quality topology cartoons in a style commonly presented by structural biologists. AVAILABILITY: TopDraw is freely available under the terms of the GNU General Public License. It can be downloaded from http://stein.bioch.dundee.ac.uk/~charlie/scripts/topdraw.html.

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Year:  2003        PMID： 12538265     DOI： 10.1093/bioinformatics/19.2.311

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  109 in total

1.  Crystal structures of putative phosphoglycerate kinases from B. anthracis and C. jejuni.

Authors:  Heping Zheng; Ekaterina V Filippova; Karolina L Tkaczuk; Piotr Dworzynski; Maksymilian Chruszcz; Przemyslaw J Porebski; Zdzislaw Wawrzak; Olena Onopriyenko; Marina Kudritska; Sarah Grimshaw; Alexei Savchenko; Wayne F Anderson; Wladek Minor
Journal:  J Struct Funct Genomics       Date:  2012-03-10

2.  Structural and biochemical basis of Yos9 protein dimerization and possible contribution to self-association of 3-hydroxy-3-methylglutaryl-coenzyme A reductase degradation ubiquitin-ligase complex.

Authors:  Jennifer Hanna; Anja Schütz; Franziska Zimmermann; Joachim Behlke; Thomas Sommer; Udo Heinemann
Journal:  J Biol Chem       Date:  2012-01-18       Impact factor: 5.157

3.  A joint x-ray and neutron study on amicyanin reveals the role of protein dynamics in electron transfer.

Authors:  N Sukumar; F S Mathews; P Langan; V L Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-29       Impact factor: 11.205

4.  Crystal structure of Bacillus subtilis SPP1 phage gp22 shares fold similarity with a domain of lactococcal phage p2 RBP.

Authors:  David Veesler; Stéphanie Blangy; Silvia Spinelli; Paulo Tavares; Valérie Campanacci; Christian Cambillau
Journal:  Protein Sci       Date:  2010-07       Impact factor: 6.725

5.  Structure of RavA MoxR AAA+ protein reveals the design principles of a molecular cage modulating the inducible lysine decarboxylase activity.

Authors:  Majida El Bakkouri; Irina Gutsche; Usheer Kanjee; Boyu Zhao; Miao Yu; Gael Goret; Guy Schoehn; Wim P Burmeister; Walid A Houry
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-09       Impact factor: 11.205

Review 6.  Structural and functional features of the NAD(P) dependent Gfo/Idh/MocA protein family oxidoreductases.

Authors:  Helena Taberman; Tarja Parkkinen; Juha Rouvinen
Journal:  Protein Sci       Date:  2016-02-01       Impact factor: 6.725

7.  Structure and metal-dependent mechanism of peptidoglycan deacetylase, a streptococcal virulence factor.

Authors:  David E Blair; Alexander W Schüttelkopf; James I MacRae; Daan M F van Aalten
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-12       Impact factor: 11.205

8.  Pseudomonas aeruginosa pyoverdine maturation enzyme PvdP has a noncanonical domain architecture and affords insight into a new subclass of tyrosinases.

Authors:  Juliane Poppe; Joachim Reichelt; Wulf Blankenfeldt
Journal:  J Biol Chem       Date:  2018-07-20       Impact factor: 5.157

9.  Structural basis for the recognition-evasion arms race between Tomato mosaic virus and the resistance gene Tm-1.

Authors:  Kazuhiro Ishibashi; Yuichiro Kezuka; Chihoko Kobayashi; Masahiko Kato; Tsuyoshi Inoue; Takamasa Nonaka; Masayuki Ishikawa; Hiroyoshi Matsumura; Etsuko Katoh
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-04       Impact factor: 11.205

10.  Molecular characterization, modeling, and docking analysis of late phytic acid biosynthesis pathway gene, inositol polyphosphate 6-/3-/5-kinase, a potential candidate for developing low phytate crops.

Authors:  Mansi Punjabi; Navneeta Bharadvaja; Archana Sachdev; Veda Krishnan
Journal:  3 Biotech       Date:  2018-07-28       Impact factor: 2.406
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