Literature DB >> 23145912

Active transposition in genomes.

Cheng Ran Lisa Huang1, Kathleen H Burns, Jef D Boeke.   

Abstract

Transposons are DNA sequences capable of moving in genomes. Early evidence showed their accumulation in many species and suggested their continued activity in at least isolated organisms. In the past decade, with the development of various genomic technologies, it has become abundantly clear that ongoing activity is the rule rather than the exception. Active transposons of various classes are observed throughout plants and animals, including humans. They continue to create new insertions, have an enormous variety of structural and functional impact on genes and genomes, and play important roles in genome evolution. Transposon activities have been identified and measured by employing various strategies. Here, we summarize evidence of current transposon activity in various plant and animal genomes.

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Year:  2012        PMID: 23145912      PMCID: PMC3612533          DOI: 10.1146/annurev-genet-110711-155616

Source DB:  PubMed          Journal:  Annu Rev Genet        ISSN: 0066-4197            Impact factor:   16.830


  136 in total

1.  Retrotransposition of marked SVA elements by human L1s in cultured cells.

Authors:  Dustin C Hancks; John L Goodier; Prabhat K Mandal; Ling E Cheung; Haig H Kazazian
Journal:  Hum Mol Genet       Date:  2011-06-02       Impact factor: 6.150

Review 2.  LTR retrotransposons and flowering plant genome size: emergence of the increase/decrease model.

Authors:  C Vitte; O Panaud
Journal:  Cytogenet Genome Res       Date:  2005       Impact factor: 1.636

3.  A novel active endogenous retrovirus family contributes to genome variability in rat inbred strains.

Authors:  Yongming Wang; Frantisek Liska; Claudia Gosele; Lucie Sedová; Vladimír Kren; Drahomíra Krenová; Zoltán Ivics; Norbert Hubner; Zsuzsanna Izsvák
Journal:  Genome Res       Date:  2009-11-03       Impact factor: 9.043

4.  Rodent L1 evolution has been driven by a single dominant lineage that has repeatedly acquired new transcriptional regulatory sequences.

Authors:  N B Adey; S A Schichman; D K Graham; S N Peterson; M H Edgell; C A Hutchison
Journal:  Mol Biol Evol       Date:  1994-09       Impact factor: 16.240

5.  The dynamic genome of Hydra.

Authors:  Jarrod A Chapman; Ewen F Kirkness; Oleg Simakov; Steven E Hampson; Therese Mitros; Thomas Weinmaier; Thomas Rattei; Prakash G Balasubramanian; Jon Borman; Dana Busam; Kathryn Disbennett; Cynthia Pfannkoch; Nadezhda Sumin; Granger G Sutton; Lakshmi Devi Viswanathan; Brian Walenz; David M Goodstein; Uffe Hellsten; Takeshi Kawashima; Simon E Prochnik; Nicholas H Putnam; Shengquiang Shu; Bruce Blumberg; Catherine E Dana; Lydia Gee; Dennis F Kibler; Lee Law; Dirk Lindgens; Daniel E Martinez; Jisong Peng; Philip A Wigge; Bianca Bertulat; Corina Guder; Yukio Nakamura; Suat Ozbek; Hiroshi Watanabe; Konstantin Khalturin; Georg Hemmrich; André Franke; René Augustin; Sebastian Fraune; Eisuke Hayakawa; Shiho Hayakawa; Mamiko Hirose; Jung Shan Hwang; Kazuho Ikeo; Chiemi Nishimiya-Fujisawa; Atshushi Ogura; Toshio Takahashi; Patrick R H Steinmetz; Xiaoming Zhang; Roland Aufschnaiter; Marie-Kristin Eder; Anne-Kathrin Gorny; Willi Salvenmoser; Alysha M Heimberg; Benjamin M Wheeler; Kevin J Peterson; Angelika Böttger; Patrick Tischler; Alexander Wolf; Takashi Gojobori; Karin A Remington; Robert L Strausberg; J Craig Venter; Ulrich Technau; Bert Hobmayer; Thomas C G Bosch; Thomas W Holstein; Toshitaka Fujisawa; Hans R Bode; Charles N David; Daniel S Rokhsar; Robert E Steele
Journal:  Nature       Date:  2010-03-14       Impact factor: 49.962

Review 6.  SVA retrotransposons: Evolution and genetic instability.

Authors:  Dustin C Hancks; Haig H Kazazian
Journal:  Semin Cancer Biol       Date:  2010-04-21       Impact factor: 15.707

Review 7.  Retrotransposable elements and human disease.

Authors:  P A Callinan; M A Batzer
Journal:  Genome Dyn       Date:  2006

8.  Genome sequence comparison of Col and Ler lines reveals the dynamic nature of Arabidopsis chromosomes.

Authors:  Piotr A Ziolkowski; Grzegorz Koczyk; Lukasz Galganski; Jan Sadowski
Journal:  Nucleic Acids Res       Date:  2009-03-21       Impact factor: 16.971

9.  Genome analysis of the platypus reveals unique signatures of evolution.

Authors:  Wesley C Warren; LaDeana W Hillier; Jennifer A Marshall Graves; Ewan Birney; Chris P Ponting; Frank Grützner; Katherine Belov; Webb Miller; Laura Clarke; Asif T Chinwalla; Shiaw-Pyng Yang; Andreas Heger; Devin P Locke; Pat Miethke; Paul D Waters; Frédéric Veyrunes; Lucinda Fulton; Bob Fulton; Tina Graves; John Wallis; Xose S Puente; Carlos López-Otín; Gonzalo R Ordóñez; Evan E Eichler; Lin Chen; Ze Cheng; Janine E Deakin; Amber Alsop; Katherine Thompson; Patrick Kirby; Anthony T Papenfuss; Matthew J Wakefield; Tsviya Olender; Doron Lancet; Gavin A Huttley; Arian F A Smit; Andrew Pask; Peter Temple-Smith; Mark A Batzer; Jerilyn A Walker; Miriam K Konkel; Robert S Harris; Camilla M Whittington; Emily S W Wong; Neil J Gemmell; Emmanuel Buschiazzo; Iris M Vargas Jentzsch; Angelika Merkel; Juergen Schmitz; Anja Zemann; Gennady Churakov; Jan Ole Kriegs; Juergen Brosius; Elizabeth P Murchison; Ravi Sachidanandam; Carly Smith; Gregory J Hannon; Enkhjargal Tsend-Ayush; Daniel McMillan; Rosalind Attenborough; Willem Rens; Malcolm Ferguson-Smith; Christophe M Lefèvre; Julie A Sharp; Kevin R Nicholas; David A Ray; Michael Kube; Richard Reinhardt; Thomas H Pringle; James Taylor; Russell C Jones; Brett Nixon; Jean-Louis Dacheux; Hitoshi Niwa; Yoko Sekita; Xiaoqiu Huang; Alexander Stark; Pouya Kheradpour; Manolis Kellis; Paul Flicek; Yuan Chen; Caleb Webber; Ross Hardison; Joanne Nelson; Kym Hallsworth-Pepin; Kim Delehaunty; Chris Markovic; Pat Minx; Yucheng Feng; Colin Kremitzki; Makedonka Mitreva; Jarret Glasscock; Todd Wylie; Patricia Wohldmann; Prathapan Thiru; Michael N Nhan; Craig S Pohl; Scott M Smith; Shunfeng Hou; Mikhail Nefedov; Pieter J de Jong; Marilyn B Renfree; Elaine R Mardis; Richard K Wilson
Journal:  Nature       Date:  2008-05-08       Impact factor: 49.962

10.  High rate of recent transposable element-induced adaptation in Drosophila melanogaster.

Authors:  Josefa González; Kapa Lenkov; Mikhail Lipatov; J Michael Macpherson; Dmitri A Petrov
Journal:  PLoS Biol       Date:  2008-10-21       Impact factor: 8.029

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  167 in total

1.  Diversity, distribution and dynamics of full-length Copia and Gypsy LTR retroelements in Solanum lycopersicum.

Authors:  Rosalía Cristina Paz; Melisa Eliana Kozaczek; Hernán Guillermo Rosli; Natalia Pilar Andino; Maria Virginia Sanchez-Puerta
Journal:  Genetica       Date:  2017-08-03       Impact factor: 1.082

2.  Preferential retrotransposition in aging yeast mother cells is correlated with increased genome instability.

Authors:  Melissa N Patterson; Alison E Scannapieco; Pak Ho Au; Savanna Dorsey; Catherine A Royer; Patrick H Maxwell
Journal:  DNA Repair (Amst)       Date:  2015-08-07

Review 3.  Dynamics of vertebrate sex chromosome evolution: from equal size to giants and dwarfs.

Authors:  Manfred Schartl; Michael Schmid; Indrajit Nanda
Journal:  Chromosoma       Date:  2015-12-29       Impact factor: 4.316

Review 4.  Paleovirology of 'syncytins', retroviral env genes exapted for a role in placentation.

Authors:  Christian Lavialle; Guillaume Cornelis; Anne Dupressoir; Cécile Esnault; Odile Heidmann; Cécile Vernochet; Thierry Heidmann
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-08-12       Impact factor: 6.237

5.  SQuIRE reveals locus-specific regulation of interspersed repeat expression.

Authors:  Wan R Yang; Daniel Ardeljan; Clarissa N Pacyna; Lindsay M Payer; Kathleen H Burns
Journal:  Nucleic Acids Res       Date:  2019-03-18       Impact factor: 16.971

Review 6.  Retrotransposons as regulators of gene expression.

Authors:  Reyad A Elbarbary; Bronwyn A Lucas; Lynne E Maquat
Journal:  Science       Date:  2016-02-11       Impact factor: 47.728

Review 7.  Control of Transposon-Mediated Directed Mutation by the Escherichia coli Phosphoenolpyruvate:Sugar Phosphotransferase System.

Authors:  Milton H Saier; Zhongge Zhang
Journal:  J Mol Microbiol Biotechnol       Date:  2015-07-09

8.  The histone methyltransferase SETDB1 represses endogenous and exogenous retroviruses in B lymphocytes.

Authors:  Patrick L Collins; Katherine E Kyle; Takeshi Egawa; Yoichi Shinkai; Eugene M Oltz
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-22       Impact factor: 11.205

9.  Genomic localization of AtRE1 and AtRE2, copia-type retrotransposons, in natural variants of Arabidopsis thaliana.

Authors:  Mari Yamada; Yumi Yamagishi; Masashi Akaoka; Hidetaka Ito; Atsushi Kato
Journal:  Mol Genet Genomics       Date:  2014-04-27       Impact factor: 3.291

Review 10.  Response of transposable elements to environmental stressors.

Authors:  Isabelle R Miousse; Marie-Cecile G Chalbot; Annie Lumen; Alesia Ferguson; Ilias G Kavouras; Igor Koturbash
Journal:  Mutat Res Rev Mutat Res       Date:  2015-05-30       Impact factor: 5.657

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