Literature DB >> 18724056

Retrotransposable elements and human disease.

P A Callinan1, M A Batzer.   

Abstract

Nearly 50% of the human genome is composed of fossils from the remains of past transposable element duplication. Mobilization continues in the genomes of extant humans but is now restricted to retrotransposons, a class of mobile elements that move via a copy and paste mechanism. Currently active retrotransposable elements include Long INterspersed Elements (LINEs), Short INterspersed Elements (SINEs) and SVA (SINE/VNTR/Alu) elements. Retrotransposons are responsible for creating genetic variation and on occasion, disease-causing mutations, within the human genome. Approximately 0.27% of all human disease mutations are attributable to retrotransposable elements. Different mechanisms of genome alteration created by retrotransposable elements include insertional mutagenesis, recombination, retrotransposition-mediated and gene conversion-mediated deletion, and 3' transduction. Although researchers in the field of human genetics have discovered many mutational mechanisms for retrotransposable elements, their contribution to genetic variation within humans is still being resolved.

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Year:  2006        PMID: 18724056     DOI: 10.1159/000092503

Source DB:  PubMed          Journal:  Genome Dyn        ISSN: 1660-9263


  85 in total

1.  Assembly and characterization of novel Alu inserts detected from next-generation sequencing data.

Authors:  Harun Mustafa; Matei David; Michael Brudno
Journal:  Mob Genet Elements       Date:  2014-12-12

2.  Alu element-containing RNAs maintain nucleolar structure and function.

Authors:  Maïwen Caudron-Herger; Teresa Pankert; Jeanette Seiler; Attila Németh; Renate Voit; Ingrid Grummt; Karsten Rippe
Journal:  EMBO J       Date:  2015-10-13       Impact factor: 11.598

3.  Footprint of APOBEC3 on the genome of human retroelements.

Authors:  Firoz Anwar; Miles P Davenport; Diako Ebrahimi
Journal:  J Virol       Date:  2013-05-22       Impact factor: 5.103

4.  Retrotransposon-centered analysis of piRNA targeting shows a shift from active to passive retrotransposon transcription in developing mouse testes.

Authors:  Tobias Mourier
Journal:  BMC Genomics       Date:  2011-09-01       Impact factor: 3.969

5.  Reading TE leaves: new approaches to the identification of transposable element insertions.

Authors:  David A Ray; Mark A Batzer
Journal:  Genome Res       Date:  2011-06       Impact factor: 9.043

Review 6.  The struggle for life of the genome's selfish architects.

Authors:  Aurélie Hua-Van; Arnaud Le Rouzic; Thibaud S Boutin; Jonathan Filée; Pierre Capy
Journal:  Biol Direct       Date:  2011-03-17       Impact factor: 4.540

7.  An alternative pathway for Alu retrotransposition suggests a role in DNA double-strand break repair.

Authors:  Deepa Srikanta; Shurjo K Sen; Charles T Huang; Erin M Conlin; Ryan M Rhodes; Mark A Batzer
Journal:  Genomics       Date:  2008-11-11       Impact factor: 5.736

8.  Reading between the LINEs to see into the past.

Authors:  David A Ray; Roy N Platt; Mark A Batzer
Journal:  Trends Genet       Date:  2009-11       Impact factor: 11.639

9.  Mobilizing diversity: transposable element insertions in genetic variation and disease.

Authors:  Kathryn A O'Donnell; Kathleen H Burns
Journal:  Mob DNA       Date:  2010-09-02

10.  Large-scale discovery of insertion hotspots and preferential integration sites of human transposed elements.

Authors:  Asaf Levy; Schraga Schwartz; Gil Ast
Journal:  Nucleic Acids Res       Date:  2009-12-14       Impact factor: 16.971

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