Literature DB >> 23143246

Expression, purification, crystallization and preliminary X-ray crystallographic analysis of Zucchini from Drosophila melanogaster.

Satoshi Fukuhara1, Hiroshi Nishimasu, Luc Bonnefond, Naoki Matsumoto, Ryuichiro Ishitani, Osamu Nureki.   

Abstract

PIWI-interacting RNAs (piRNAs) bind PIWI proteins and silence transposons to maintain the genomic integrity of germ cells. Zucchini (Zuc), a phospholipase D superfamily member, is conserved among animals and is implicated in piRNA biogenesis. However, the underlying mechanism by which Zuc participates in piRNA biogenesis remains elusive. Drosophila melanogaster Zuc (DmZuc) was expressed in Escherichia coli, purified and crystallized. X-ray diffraction data were collected to 1.75 Å resolution. The crystal belonged to space group P2(1), with unit-cell parameters a=55.0, b=71.2, c=56.3 Å, β=107.9°.

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Year:  2012        PMID: 23143246      PMCID: PMC3515378          DOI: 10.1107/S1744309112038936

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  25 in total

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3.  Molecular replacement with MOLREP.

Authors:  Alexei Vagin; Alexei Teplyakov
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Authors:  M A Larkin; G Blackshields; N P Brown; R Chenna; P A McGettigan; H McWilliam; F Valentin; I M Wallace; A Wilm; R Lopez; J D Thompson; T J Gibson; D G Higgins
Journal:  Bioinformatics       Date:  2007-09-10       Impact factor: 6.937

5.  An in vivo RNAi assay identifies major genetic and cellular requirements for primary piRNA biogenesis in Drosophila.

Authors:  Daniel Olivieri; Martina M Sykora; Ravi Sachidanandam; Karl Mechtler; Julius Brennecke
Journal:  EMBO J       Date:  2010-09-03       Impact factor: 11.598

6.  Roles for the Yb body components Armitage and Yb in primary piRNA biogenesis in Drosophila.

Authors:  Kuniaki Saito; Hirotsugu Ishizu; Miharu Komai; Hazuki Kotani; Yoshinori Kawamura; Kazumichi M Nishida; Haruhiko Siomi; Mikiko C Siomi
Journal:  Genes Dev       Date:  2010-10-21       Impact factor: 11.361

Review 7.  Small RNAs as guardians of the genome.

Authors:  Colin D Malone; Gregory J Hannon
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

8.  Specialized piRNA pathways act in germline and somatic tissues of the Drosophila ovary.

Authors:  Colin D Malone; Julius Brennecke; Monica Dus; Alexander Stark; W Richard McCombie; Ravi Sachidanandam; Gregory J Hannon
Journal:  Cell       Date:  2009-04-23       Impact factor: 41.582

9.  A regulatory circuit for piwi by the large Maf gene traffic jam in Drosophila.

Authors:  Kuniaki Saito; Sachi Inagaki; Toutai Mituyama; Yoshinori Kawamura; Yukiteru Ono; Eri Sakota; Hazuki Kotani; Kiyoshi Asai; Haruhiko Siomi; Mikiko C Siomi
Journal:  Nature       Date:  2009-10-07       Impact factor: 49.962

10.  Collapse of germline piRNAs in the absence of Argonaute3 reveals somatic piRNAs in flies.

Authors:  Chengjian Li; Vasily V Vagin; Soohyun Lee; Jia Xu; Shengmei Ma; Hualin Xi; Hervé Seitz; Michael D Horwich; Monika Syrzycka; Barry M Honda; Ellen L W Kittler; Maria L Zapp; Carla Klattenhoff; Nadine Schulz; William E Theurkauf; Zhiping Weng; Phillip D Zamore
Journal:  Cell       Date:  2009-04-23       Impact factor: 41.582

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  1 in total

1.  Structure and function of Zucchini endoribonuclease in piRNA biogenesis.

Authors:  Hiroshi Nishimasu; Hirotsugu Ishizu; Kuniaki Saito; Satoshi Fukuhara; Miharu K Kamatani; Luc Bonnefond; Naoki Matsumoto; Tomohiro Nishizawa; Keita Nakanaga; Junken Aoki; Ryuichiro Ishitani; Haruhiko Siomi; Mikiko C Siomi; Osamu Nureki
Journal:  Nature       Date:  2012-10-14       Impact factor: 49.962

  1 in total

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