Literature DB >> 23140124

Sepsis: from pattern to mechanism and back.

Gary An1, Rami A Namas, Yoram Vodovotz.   

Abstract

Sepsis is a clinical entity in which complex inflammatory and physiological processes are mobilized, not only across a range of cellular and molecular interactions, but also in clinically relevant physiological signals accessible at the bedside. There is a need for a mechanistic understanding that links the clinical phenomenon of physiologic variability with the underlying patterns of the biology of inflammation, and we assert that this can be facilitated through the use of dynamic mathematical and computational modeling. An iterative approach of laboratory experimentation and mathematical/computational modeling has the potential to integrate cellular biology, physiology, control theory, and systems engineering across biological scales, yielding insights into the control structures that govern mechanisms by which phenomena, detected as biological patterns, are produced. This approach can represent hypotheses in the formal language of mathematics and computation, and link behaviors that cross scales and domains, thereby offering the opportunity to better explain, diagnose, and intervene in the care of the septic patient.

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Mesh:

Year:  2012        PMID: 23140124      PMCID: PMC3623270          DOI: 10.1615/critrevbiomedeng.v40.i4.80

Source DB:  PubMed          Journal:  Crit Rev Biomed Eng        ISSN: 0278-940X


  122 in total

Review 1.  Molecular diagnostics of sepsis--where are we today?

Authors:  Michael Bauer; Konrad Reinhart
Journal:  Int J Med Microbiol       Date:  2010-05-26       Impact factor: 3.473

2.  In silico experiments of existing and hypothetical cytokine-directed clinical trials using agent-based modeling.

Authors:  Gary An
Journal:  Crit Care Med       Date:  2004-10       Impact factor: 7.598

3.  A reduced mathematical model of the acute inflammatory response: I. Derivation of model and analysis of anti-inflammation.

Authors:  Angela Reynolds; Jonathan Rubin; Gilles Clermont; Judy Day; Yoram Vodovotz; G Bard Ermentrout
Journal:  J Theor Biol       Date:  2006-04-03       Impact factor: 2.691

4.  Toll-like receptor 2 ligands on the staphylococcal cell wall downregulate superantigen-induced T cell activation and prevent toxic shock syndrome.

Authors:  Thu A Chau; Michelle L McCully; William Brintnell; Gary An; Katherine J Kasper; Enrique D Vinés; Paul Kubes; S M Mansour Haeryfar; John K McCormick; Ewa Cairns; David E Heinrichs; Joaquín Madrenas
Journal:  Nat Med       Date:  2009-06       Impact factor: 53.440

5.  Heart rate variability. Standards of measurement, physiological interpretation, and clinical use. Task Force of the European Society of Cardiology and the North American Society of Pacing and Electrophysiology.

Authors: 
Journal:  Eur Heart J       Date:  1996-03       Impact factor: 29.983

Review 6.  The emerging field of quantitative blood metabolomics for biomarker discovery in critical illnesses.

Authors:  Natalie J Serkova; Theodore J Standiford; Kathleen A Stringer
Journal:  Am J Respir Crit Care Med       Date:  2011-06-16       Impact factor: 21.405

7.  In Silico Augmentation of the Drug Development Pipeline: Examples from the study of Acute Inflammation.

Authors:  Gary An; John Bartels; Yoram Vodovotz
Journal:  Drug Dev Res       Date:  2011-03-01       Impact factor: 4.360

8.  A mathematical simulation of the inflammatory response to anthrax infection.

Authors:  Rukmini Kumar; Carson C Chow; John D Bartels; Gilles Clermont; Yoram Vodovotz
Journal:  Shock       Date:  2008-01       Impact factor: 3.454

Review 9.  Injury research in the genomic era.

Authors:  J Perren Cobb; Grant E O'Keefe
Journal:  Lancet       Date:  2004-06-19       Impact factor: 79.321

10.  Autonomic control of the heart and peripheral vessels in human septic shock.

Authors:  M Piepoli; C S Garrard; D A Kontoyannis; L Bernardi
Journal:  Intensive Care Med       Date:  1995-02       Impact factor: 17.440

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  9 in total

Review 1.  From data patterns to mechanistic models in acute critical illness.

Authors:  Jean-Marie Aerts; Wassim M Haddad; Gary An; Yoram Vodovotz
Journal:  J Crit Care       Date:  2014-03-29       Impact factor: 3.425

2.  Roles of Toll-Like Receptor 4, IκB Kinase, and the Proteasome in the Intestinal Alterations Caused by Sepsis.

Authors:  Sergio Gonzalo; Marta Sofía Valero; Fernando Martínez de Salinas; Claudia Vergara; María Pilar Arruebo; Miguel Ángel Plaza; María Divina Murillo; Laura Grasa
Journal:  Dig Dis Sci       Date:  2014-11-05       Impact factor: 3.199

3.  Inducible protein-10, a potential driver of neurally controlled interleukin-10 and morbidity in human blunt trauma.

Authors:  Akram M Zaaqoq; Rami Namas; Khalid Almahmoud; Nabil Azhar; Qi Mi; Ruben Zamora; David M Brienza; Timothy R Billiar; Yoram Vodovotz
Journal:  Crit Care Med       Date:  2014-06       Impact factor: 7.598

Review 4.  In silico modeling: methods and applications to trauma and sepsis.

Authors:  Yoram Vodovotz; Timothy R Billiar
Journal:  Crit Care Med       Date:  2013-08       Impact factor: 7.598

5.  Transcriptional Regulation of the Group IIA Secretory Phospholipase A2 Gene by C/EBPδ in Rat liver and its Relationship to Hepatic Gluconeogenesis during Sepsis.

Authors:  Rei-Cheng Yang; Chin Hsu; Tzu-Ying Lee; Kung-Kai Kuo; Shou-Mei Wu; Yen-Hsu Chen; Mei-Ling Ho; Xing-Hai Yao; Chia-Hsiung Liu; Maw-Shung Liu
Journal:  Emerg Med (Los Angel)       Date:  2013-08-28

Review 6.  Insights into the Role of Chemokines, Damage-Associated Molecular Patterns, and Lymphocyte-Derived Mediators from Computational Models of Trauma-Induced Inflammation.

Authors:  Rami A Namas; Qi Mi; Rajaie Namas; Khalid Almahmoud; Akram M Zaaqoq; Othman Abdul-Malak; Nabil Azhar; Judy Day; Andrew Abboud; Ruben Zamora; Timothy R Billiar; Yoram Vodovotz
Journal:  Antioxid Redox Signal       Date:  2015-12-10       Impact factor: 8.401

7.  Alteration of histone H3 lysine 9 dimethylation in peripheral white blood cells of septic patients with trauma and cancer.

Authors:  Linghui Jiang; Yiqin Wang; Duming Zhu; Zhanggang Xue; Hailei Mao
Journal:  Mol Med Rep       Date:  2016-11-22       Impact factor: 2.952

8.  Role of vimentin in modulating immune cell apoptosis and inflammatory responses in sepsis.

Authors:  Longxiang Su; Pan Pan; Peng Yan; Yun Long; Xiang Zhou; Xiaoting Wang; Ruo Zhou; Bo Wen; Lixin Xie; Dawei Liu
Journal:  Sci Rep       Date:  2019-04-05       Impact factor: 4.379

9.  Glycyrrhizin protects against porcine endotoxemia through modulation of systemic inflammatory response.

Authors:  Wei Wang; Feng Zhao; Yong Fang; Xiantao Li; Lei Shen; Tongwa Cao; Hechen Zhu
Journal:  Crit Care       Date:  2013-03-11       Impact factor: 9.097

  9 in total

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