Literature DB >> 21680948

The emerging field of quantitative blood metabolomics for biomarker discovery in critical illnesses.

Natalie J Serkova1, Theodore J Standiford, Kathleen A Stringer.   

Abstract

Metabolomics, a science of systems biology, is the global assessment of endogenous metabolites within a biologic system and represents a "snapshot" reading of gene function, enzyme activity, and the physiological landscape. Metabolite detection, either individual or grouped as a metabolomic profile, is usually performed in cells, tissues, or biofluids by either nuclear magnetic resonance spectroscopy or mass spectrometry followed by sophisticated multivariate data analysis. Because loss of metabolic homeostasis is common in critical illness, the metabolome could have many applications, including biomarker and drug target identification. Metabolomics could also significantly advance our understanding of the complex pathophysiology of acute illnesses, such as sepsis and acute lung injury/acute respiratory distress syndrome. Despite this potential, the clinical community is largely unfamiliar with the field of metabolomics, including the methodologies involved, technical challenges, and, most importantly, clinical uses. Although there is evidence of successful preclinical applications, the clinical usefulness and application of metabolomics in critical illness is just beginning to emerge, the advancement of which hinges on linking metabolite data to known and validated clinically relevant indices. In addition, other important aspects, such as patient selection, sample collection, and processing, as well as the needed multivariate data analysis, have to be taken into consideration before this innovative approach to biomarker discovery can become a reliable tool in the intensive care unit. The purpose of this review is to begin to familiarize clinicians with the field of metabolomics and its application for biomarker discovery in critical illnesses such as sepsis.

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Year:  2011        PMID: 21680948      PMCID: PMC3208597          DOI: 10.1164/rccm.201103-0474CI

Source DB:  PubMed          Journal:  Am J Respir Crit Care Med        ISSN: 1073-449X            Impact factor:   21.405


  61 in total

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Authors:  Natalie J Serkova; Claus U Niemann
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2.  Investigations of the effects of gender, diurnal variation, and age in human urinary metabolomic profiles.

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Journal:  Anal Chem       Date:  2007-08-17       Impact factor: 6.986

3.  Metabolomic identification of novel biomarkers of myocardial ischemia.

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Journal:  Circulation       Date:  2005-12-12       Impact factor: 29.690

4.  Human urine as test material in 1H NMR-based metabonomics: recommendations for sample preparation and storage.

Authors:  Michael Lauridsen; Steen H Hansen; Jerzy W Jaroszewski; Claus Cornett
Journal:  Anal Chem       Date:  2007-02-01       Impact factor: 6.986

5.  Metabolic regulation in the lactating mammary gland: a lipid synthesizing machine.

Authors:  Michael C Rudolph; James L McManaman; TzuLip Phang; Tanya Russell; Douglas J Kominsky; Natalie J Serkova; Torsten Stein; Steven M Anderson; Margaret C Neville
Journal:  Physiol Genomics       Date:  2006-11-14       Impact factor: 3.107

6.  Metabolomics by proton nuclear magnetic resonance spectroscopy of the response to chloroethylnitrosourea reveals drug efficacy and tumor adaptive metabolic pathways.

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7.  Glutamine attenuates lung injury and improves survival after sepsis: role of enhanced heat shock protein expression.

Authors:  Kristen D Singleton; Natalie Serkova; Virgina E Beckey; Paul E Wischmeyer
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8.  H-NMR-based metabolic signatures of mild and severe ischemia/reperfusion injury in rat kidney transplants.

Authors:  Natalie Serkova; T Florian Fuller; Jost Klawitter; Chris E Freise; Claus U Niemann
Journal:  Kidney Int       Date:  2005-03       Impact factor: 10.612

Review 9.  Biochemical mechanisms of nephrotoxicity: application for metabolomics.

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Journal:  Expert Opin Drug Metab Toxicol       Date:  2007-08       Impact factor: 4.481

10.  HMDB: the Human Metabolome Database.

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Journal:  Nucleic Acids Res       Date:  2007-01       Impact factor: 16.971

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  66 in total

Review 1.  Update in respiratory infections 2011.

Authors:  Richard G Wunderink; Michael S Niederman
Journal:  Am J Respir Crit Care Med       Date:  2012-06-15       Impact factor: 21.405

Review 2.  Genomic medicine and lung diseases.

Authors:  David M Center; David A Schwartz; Julian Solway; Dorothy Gail; Aaron D Laposky; Qing S Lin; Weiniu Gan
Journal:  Am J Respir Crit Care Med       Date:  2012-05-31       Impact factor: 21.405

3.  Early hemorrhage triggers metabolic responses that build up during prolonged shock.

Authors:  Angelo D'Alessandro; Hunter B Moore; Ernest E Moore; Matthew Wither; Travis Nemkov; Eduardo Gonzalez; Anne Slaughter; Miguel Fragoso; Kirk C Hansen; Christopher C Silliman; Anirban Banerjee
Journal:  Am J Physiol Regul Integr Comp Physiol       Date:  2015-04-15       Impact factor: 3.619

Review 4.  Metabolomics as a Driver in Advancing Precision Medicine in Sepsis.

Authors:  Michelle Eckerle; Lilliam Ambroggio; Michael A Puskarich; Brent Winston; Alan E Jones; Theodore J Standiford; Kathleen A Stringer
Journal:  Pharmacotherapy       Date:  2017-07-31       Impact factor: 4.705

5.  Biomarkers in sepsis.

Authors:  Keith R Walley
Journal:  Curr Infect Dis Rep       Date:  2013-10       Impact factor: 3.725

Review 6.  Clinical metabolomics: the next stage of clinical biochemistry.

Authors:  Angelo D'Alessandro; Bruno Giardina; Federica Gevi; Anna Maria Timperio; Lello Zolla
Journal:  Blood Transfus       Date:  2012-05       Impact factor: 3.443

7.  The Metabolopathy of Tissue Injury, Hemorrhagic Shock, and Resuscitation in a Rat Model.

Authors:  Anne L Slaughter; Geoffrey R Nunns; Angelo D'Alessandro; Anirban Banerjee; Kirk C Hansen; Ernest E Moore; Christopher C Silliman; Travis Nemkov; Hunter B Moore; Miguel Fragoso; Kiara Leasia; Erik D Peltz
Journal:  Shock       Date:  2018-05       Impact factor: 3.454

8.  New approaches to sepsis: molecular diagnostics and biomarkers.

Authors:  Konrad Reinhart; Michael Bauer; Niels C Riedemann; Christiane S Hartog
Journal:  Clin Microbiol Rev       Date:  2012-10       Impact factor: 26.132

9.  Untargeted LC-MS metabolomics of bronchoalveolar lavage fluid differentiates acute respiratory distress syndrome from health.

Authors:  Charles R Evans; Alla Karnovsky; Melissa A Kovach; Theodore J Standiford; Charles F Burant; Kathleen A Stringer
Journal:  J Proteome Res       Date:  2013-12-09       Impact factor: 4.466

10.  Pharmacometabolomics of l-carnitine treatment response phenotypes in patients with septic shock.

Authors:  Michael A Puskarich; Michael A Finkel; Alla Karnovsky; Alan E Jones; Julie Trexel; Brooke N Harris; Kathleen A Stringer
Journal:  Ann Am Thorac Soc       Date:  2015-01
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