Literature DB >> 23863232

In silico modeling: methods and applications to trauma and sepsis.

Yoram Vodovotz1, Timothy R Billiar.   

Abstract

OBJECTIVES: To familiarize clinicians with advances in computational disease modeling applied to trauma and sepsis. DATA SOURCES: PubMed search and review of relevant medical literature.
SUMMARY: Definitions, key methods, and applications of computational modeling to trauma and sepsis are reviewed.
CONCLUSIONS: Computational modeling of inflammation and organ dysfunction at the cellular, organ, whole-organism, and population levels has suggested a positive feedback cycle of inflammation → damage → inflammation that manifests via organ-specific inflammatory switching networks. This structure may manifest as multicompartment "tipping points" that drive multiple organ dysfunction. This process may be amenable to rational inflammation reprogramming.

Entities:  

Mesh:

Year:  2013        PMID: 23863232      PMCID: PMC3722589          DOI: 10.1097/CCM.0b013e31829a6eb4

Source DB:  PubMed          Journal:  Crit Care Med        ISSN: 0090-3493            Impact factor:   7.598


  104 in total

1.  In silico experiments of existing and hypothetical cytokine-directed clinical trials using agent-based modeling.

Authors:  Gary An
Journal:  Crit Care Med       Date:  2004-10       Impact factor: 7.598

2.  A reduced mathematical model of the acute inflammatory response II. Capturing scenarios of repeated endotoxin administration.

Authors:  Judy Day; Jonathan Rubin; Yoram Vodovotz; Carson C Chow; Angela Reynolds; Gilles Clermont
Journal:  J Theor Biol       Date:  2006-04-17       Impact factor: 2.691

3.  A reduced mathematical model of the acute inflammatory response: I. Derivation of model and analysis of anti-inflammation.

Authors:  Angela Reynolds; Jonathan Rubin; Gilles Clermont; Judy Day; Yoram Vodovotz; G Bard Ermentrout
Journal:  J Theor Biol       Date:  2006-04-03       Impact factor: 2.691

4.  Global patterns of mortality in young people: a systematic analysis of population health data.

Authors:  George C Patton; Carolyn Coffey; Susan M Sawyer; Russell M Viner; Dagmar M Haller; Krishna Bose; Theo Vos; Jane Ferguson; Colin D Mathers
Journal:  Lancet       Date:  2009-09-12       Impact factor: 79.321

5.  In Silico Augmentation of the Drug Development Pipeline: Examples from the study of Acute Inflammation.

Authors:  Gary An; John Bartels; Yoram Vodovotz
Journal:  Drug Dev Res       Date:  2011-03-01       Impact factor: 4.360

6.  A physiological model for autonomic heart rate regulation in human endotoxemia.

Authors:  Panagiota T Foteinou; Steve E Calvano; Stephen F Lowry; Ioannis P Androulakis
Journal:  Shock       Date:  2011-03       Impact factor: 3.454

7.  Analysis and verification of the HMGB1 signaling pathway.

Authors:  Haijun Gong; Paolo Zuliani; Anvesh Komuravelli; James R Faeder; Edmund M Clarke
Journal:  BMC Bioinformatics       Date:  2010-10-15       Impact factor: 3.169

Review 8.  Injury research in the genomic era.

Authors:  J Perren Cobb; Grant E O'Keefe
Journal:  Lancet       Date:  2004-06-19       Impact factor: 79.321

Review 9.  Early events in the recognition of danger signals after tissue injury.

Authors:  David J Kaczorowski; Kevin P Mollen; Rebecca Edmonds; Timothy R Billiar
Journal:  J Leukoc Biol       Date:  2007-11-21       Impact factor: 4.962

Review 10.  Toward a comprehensive language for biological systems.

Authors:  James R Faeder
Journal:  BMC Biol       Date:  2011-10-17       Impact factor: 7.431

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  31 in total

1.  Computational Analysis Supports IL-17A as a Central Driver of Neutrophil Extracellular Trap-Mediated Injury in Liver Ischemia Reperfusion.

Authors:  Samer Tohme; Hamza O Yazdani; Vikas Sud; Patricia Loughran; Hai Huang; Ruben Zamora; Richard L Simmons; Yoram Vodovotz; Allan Tsung
Journal:  J Immunol       Date:  2018-11-30       Impact factor: 5.422

2.  Impact of Injury Severity on Dynamic Inflammation Networks Following Blunt Trauma.

Authors:  Khalid Almahmoud; Rami A Namas; Othman Abdul-Malak; Akram M Zaaqoq; Ruben Zamora; Brian S Zuckerbraun; Jason Sperry; Andrew B Peitzman; Timothy R Billiar; Yoram Vodovotz
Journal:  Shock       Date:  2015-08       Impact factor: 3.454

3.  In vivo and systems biology studies implicate IL-18 as a central mediator in chronic pain.

Authors:  Kiran Vasudeva; Yoram Vodovotz; Nabil Azhar; Derek Barclay; Jelena M Janjic; John A Pollock
Journal:  J Neuroimmunol       Date:  2015-04-28       Impact factor: 3.478

4.  The role of NIGMS P50 sponsored team science in our understanding of multiple organ failure.

Authors:  Frederick A Moore; Ernest E Moore; Timothy R Billiar; Yoram Vodovotz; Anirban Banerjee; Lyle L Moldawer
Journal:  J Trauma Acute Care Surg       Date:  2017-09       Impact factor: 3.313

5.  From static to dynamic: a sepsis-specific dynamic model from clinical criteria in polytrauma patients.

Authors:  Rami A Namas; Yoram Vodovotz
Journal:  Ann Transl Med       Date:  2016-12

Review 6.  Engineering control into medicine.

Authors:  David J Stone; Leo Anthony Celi; Marie Csete
Journal:  J Crit Care       Date:  2015-01-30       Impact factor: 3.425

7.  Global sensitivity analysis of a mathematical model of acute inflammation identifies nonlinear dependence of cumulative tissue damage on host interleukin-6 responses.

Authors:  Shibin Mathew; John Bartels; Ipsita Banerjee; Yoram Vodovotz
Journal:  J Theor Biol       Date:  2014-06-05       Impact factor: 2.691

8.  Sepsis reconsidered: Identifying novel metrics for behavioral landscape characterization with a high-performance computing implementation of an agent-based model.

Authors:  Chase Cockrell; Gary An
Journal:  J Theor Biol       Date:  2017-07-18       Impact factor: 2.691

9.  Inducible protein-10, a potential driver of neurally controlled interleukin-10 and morbidity in human blunt trauma.

Authors:  Akram M Zaaqoq; Rami Namas; Khalid Almahmoud; Nabil Azhar; Qi Mi; Ruben Zamora; David M Brienza; Timothy R Billiar; Yoram Vodovotz
Journal:  Crit Care Med       Date:  2014-06       Impact factor: 7.598

10.  Removal of inflammatory ascites is associated with dynamic modification of local and systemic inflammation along with prevention of acute lung injury: in vivo and in silico studies.

Authors:  Bryanna Emr; David Sadowsky; Nabil Azhar; Louis A Gatto; Gary An; Gary F Nieman; Yoram Vodovotz
Journal:  Shock       Date:  2014-04       Impact factor: 3.454

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