Literature DB >> 26560096

Insights into the Role of Chemokines, Damage-Associated Molecular Patterns, and Lymphocyte-Derived Mediators from Computational Models of Trauma-Induced Inflammation.

Rami A Namas1,2, Qi Mi3, Rajaie Namas4, Khalid Almahmoud1, Akram M Zaaqoq5, Othman Abdul-Malak1, Nabil Azhar6, Judy Day7, Andrew Abboud1, Ruben Zamora1, Timothy R Billiar1,2, Yoram Vodovotz1,2,6.   

Abstract

SIGNIFICANCE: Traumatic injury elicits a complex, dynamic, multidimensional inflammatory response that is intertwined with complications such as multiple organ dysfunction and nosocomial infection. The complex interplay between inflammation and physiology in critical illness remains a challenge for translational research, including the extrapolation to human disease from animal models. RECENT ADVANCES: Over the past decade, we and others have attempted to decipher the biocomplexity of inflammation in these settings of acute illness, using computational models to improve clinical translation. In silico modeling has been suggested as a computationally based framework for integrating data derived from basic biology experiments as well as preclinical and clinical studies. CRITICAL ISSUES: Extensive studies in cells, mice, and human blunt trauma patients have led us to suggest (i) that while an adequate level of inflammation is required for healing post-trauma, inflammation can be harmful when it becomes self-sustaining via a damage-associated molecular pattern/Toll-like receptor-driven feed-forward circuit; (ii) that chemokines play a central regulatory role in driving either self-resolving or self-maintaining inflammation that drives the early activation of both classical innate and more recently recognized lymphoid pathways; and (iii) the presence of multiple thresholds and feedback loops, which could significantly affect the propagation of inflammation across multiple body compartments. FUTURE DIRECTIONS: These insights from data-driven models into the primary drivers and interconnected networks of inflammation have been used to generate mechanistic computational models. Together, these models may be used to gain basic insights as well as serving to help define novel biomarkers and therapeutic targets.

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Year:  2015        PMID: 26560096      PMCID: PMC4685502          DOI: 10.1089/ars.2015.6398

Source DB:  PubMed          Journal:  Antioxid Redox Signal        ISSN: 1523-0864            Impact factor:   8.401


  152 in total

1.  Hydrophobicity: an ancient damage-associated molecular pattern that initiates innate immune responses.

Authors:  Seung-Yong Seong; Polly Matzinger
Journal:  Nat Rev Immunol       Date:  2004-06       Impact factor: 53.106

2.  Epidemiology of major trauma.

Authors:  K Søreide
Journal:  Br J Surg       Date:  2009-07       Impact factor: 6.939

3.  Network news: innovations in 21st century systems biology.

Authors:  Adam P Arkin; David V Schaffer
Journal:  Cell       Date:  2011-03-18       Impact factor: 41.582

4.  A better understanding of why murine models of trauma do not recapitulate the human syndrome.

Authors:  Lori F Gentile; Dina C Nacionales; M Cecilia Lopez; Erin Vanzant; Angela Cuenca; Alex G Cuenca; Ricardo Ungaro; Tezcan Ozrazgat Baslanti; Bruce A McKinley; Azra Bihorac; Joseph Cuschieri; Ronald V Maier; Frederick A Moore; Christiaan Leeuwenburgh; Henry V Baker; Lyle L Moldawer; Philip A Efron
Journal:  Crit Care Med       Date:  2014-06       Impact factor: 7.598

5.  Modeling the interactions of bacteria and Toll-like receptor-mediated inflammation in necrotizing enterocolitis.

Authors:  Julia Arciero; G Bard Ermentrout; Richard Siggers; Amin Afrazi; David Hackam; Yoram Vodovotz; Jonathan Rubin
Journal:  J Theor Biol       Date:  2012-12-10       Impact factor: 2.691

6.  In Silico Augmentation of the Drug Development Pipeline: Examples from the study of Acute Inflammation.

Authors:  Gary An; John Bartels; Yoram Vodovotz
Journal:  Drug Dev Res       Date:  2011-03-01       Impact factor: 4.360

7.  Genomic responses in mouse models greatly mimic human inflammatory diseases.

Authors:  Keizo Takao; Tsuyoshi Miyakawa
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-04       Impact factor: 11.205

8.  A mathematical simulation of the inflammatory response to anthrax infection.

Authors:  Rukmini Kumar; Carson C Chow; John D Bartels; Gilles Clermont; Yoram Vodovotz
Journal:  Shock       Date:  2008-01       Impact factor: 3.454

Review 9.  Nitric oxide. I. Physiological chemistry of nitric oxide and its metabolites:implications in inflammation.

Authors:  M B Grisham; D Jourd'Heuil; D A Wink
Journal:  Am J Physiol       Date:  1999-02

Review 10.  Animal models of human disease: inflammation.

Authors:  David R Webb
Journal:  Biochem Pharmacol       Date:  2013-06-26       Impact factor: 5.858

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  39 in total

1.  The role of NIGMS P50 sponsored team science in our understanding of multiple organ failure.

Authors:  Frederick A Moore; Ernest E Moore; Timothy R Billiar; Yoram Vodovotz; Anirban Banerjee; Lyle L Moldawer
Journal:  J Trauma Acute Care Surg       Date:  2017-09       Impact factor: 3.313

2.  From static to dynamic: a sepsis-specific dynamic model from clinical criteria in polytrauma patients.

Authors:  Rami A Namas; Yoram Vodovotz
Journal:  Ann Transl Med       Date:  2016-12

3.  Inflammation and Disease: Modelling and Modulation of the Inflammatory Response to Alleviate Critical Illness.

Authors:  Judy D Day; Chase Cockrell; Rami Namas; Ruben Zamora; Gary An; Yoram Vodovotz
Journal:  Curr Opin Syst Biol       Date:  2018-08-23

Review 4.  An overview of cytokines and heat shock response in polytraumatized patients.

Authors:  Maria Concepción Guisasola; Berta Alonso; Beatriz Bravo; Javier Vaquero; Francisco Chana
Journal:  Cell Stress Chaperones       Date:  2017-11-03       Impact factor: 3.667

5.  IL-33-mediated IL-13 secretion by ST2+ Tregs controls inflammation after lung injury.

Authors:  Quan Liu; Gaelen K Dwyer; Yifei Zhao; Huihua Li; Lisa R Mathews; Anish Bhaswanth Chakka; Uma R Chandran; Jake A Demetris; John F Alcorn; Keven M Robinson; Luis A Ortiz; Bruce R Pitt; Angus W Thomson; Ming-Hui Fan; Timothy R Billiar; Hēth R Turnquist
Journal:  JCI Insight       Date:  2019-03-21

6.  An Enrichment Strategy Yields Seven Novel Single Nucleotide Polymorphisms Associated With Mortality and Altered Th17 Responses Following Blunt Trauma.

Authors:  Lukas Schimunek; Rami A Namas; Jinling Yin; Dongmei Liu; Derek Barclay; Fayten El-Dehaibi; Andrew Abboud; Haley Lindberg; Ruben Zamora; Timothy R Billiar; Yoram Vodovotz
Journal:  Shock       Date:  2018-03       Impact factor: 3.454

7.  Elevations in Circulating sST2 Levels Are Associated With In-Hospital Mortality and Adverse Clinical Outcomes After Blunt Trauma.

Authors:  Isabel M Billiar; Jesse Guardado; Othman Abdul-Malak; Yoram Vodovotz; Timothy R Billiar; Rami A Namas
Journal:  J Surg Res       Date:  2019-07-03       Impact factor: 2.192

8.  Individual-specific principal component analysis of circulating inflammatory mediators predicts early organ dysfunction in trauma patients.

Authors:  Rami A Namas; Khalid Almahmoud; Qi Mi; Ali Ghuma; Rajaie Namas; Akram Zaaqoq; Xiaoguang Zhu; Othman Abdul-Malak; Jason Sperry; Ruben Zamora; Timothy R Billiar; Yoram Vodovotz
Journal:  J Crit Care       Date:  2016-07-11       Impact factor: 3.425

9.  Reverse Engineering the Inflammatory "Clock": From Computational Modeling to Rational Resetting.

Authors:  Yoram Vodovotz
Journal:  Drug Discov Today Dis Models       Date:  2017-04-15

10.  Computational Analysis Supports an Early, Type 17 Cell-Associated Divergence of Blunt Trauma Survival and Mortality.

Authors:  Andrew Abboud; Rami A Namas; Mostafa Ramadan; Qi Mi; Khalid Almahmoud; Othman Abdul-Malak; Nabil Azhar; Akram Zaaqoq; Rajaie Namas; Derek A Barclay; Jinling Yin; Jason Sperry; Andrew Peitzman; Ruben Zamora; Richard L Simmons; Timothy R Billiar; Yoram Vodovotz
Journal:  Crit Care Med       Date:  2016-11       Impact factor: 7.598

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