Literature DB >> 23139145

Transfer RNA modifications: nature's combinatorial chemistry playground.

Jane E Jackman1, Juan D Alfonzo.   

Abstract

Following synthesis, tRNAs are peppered by numerous chemical modifications which may differentially affect a tRNA's structure and function. Although modifications affecting the business ends of a tRNA are predictably important for cell viability, a majority of modifications play more subtle structural roles that can affect tRNA stability and folding. The current trend is that modifications act in concert and it is in the context of the specific sequence of a given tRNA that they impart their differing effects. Recent developments in the modification field have highlighted the diversity of modifications in tRNA. From these, the combinatorial nature of modifications in explaining previously described phenotypes derived from their absence has emerged as a growing theme.
Copyright © 2012 John Wiley & Sons, Ltd.

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Year:  2012        PMID: 23139145      PMCID: PMC3680101          DOI: 10.1002/wrna.1144

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev RNA        ISSN: 1757-7004            Impact factor:   9.957


  98 in total

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Journal:  J Am Chem Soc       Date:  2007-10-17       Impact factor: 15.419

2.  High temporal but low spatial heterogeneity of bacterioplankton in the Chesapeake Bay.

Authors:  Jinjun Kan; Marcelino T Suzuki; Kui Wang; Sarah E Evans; Feng Chen
Journal:  Appl Environ Microbiol       Date:  2007-09-07       Impact factor: 4.792

Review 3.  An embarrassment of riches: the enzymology of RNA modification.

Authors:  Dirk Iwata-Reuyl
Journal:  Curr Opin Chem Biol       Date:  2008-03-14       Impact factor: 8.822

Review 4.  Urm1 at the crossroad of modifications. 'Protein Modifications: Beyond the Usual Suspects' Review Series.

Authors:  Patrick G A Pedrioli; Sebastian Leidel; Kay Hofmann
Journal:  EMBO Rep       Date:  2008-12       Impact factor: 8.807

5.  The conserved Wobble uridine tRNA thiolase Ctu1-Ctu2 is required to maintain genome integrity.

Authors:  Monique Dewez; Fanélie Bauer; Marc Dieu; Martine Raes; Jean Vandenhaute; Damien Hermand
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-07       Impact factor: 11.205

6.  Mechanistic studies of Bacillus subtilis QueF, the nitrile oxidoreductase involved in queuosine biosynthesis.

Authors:  Bobby W K Lee; Steven G Van Lanen; Dirk Iwata-Reuyl
Journal:  Biochemistry       Date:  2007-10-11       Impact factor: 3.162

7.  Eukaryotic wobble uridine modifications promote a functionally redundant decoding system.

Authors:  Marcus J O Johansson; Anders Esberg; Bo Huang; Glenn R Björk; Anders S Byström
Journal:  Mol Cell Biol       Date:  2008-03-10       Impact factor: 4.272

8.  Biosynthesis of 7-deazaguanosine-modified tRNA nucleosides: a new role for GTP cyclohydrolase I.

Authors:  Gabriella Phillips; Basma El Yacoubi; Benjamin Lyons; Sophie Alvarez; Dirk Iwata-Reuyl; Valérie de Crécy-Lagard
Journal:  J Bacteriol       Date:  2008-10-17       Impact factor: 3.490

9.  Common thiolation mechanism in the biosynthesis of tRNA thiouridine and sulphur-containing cofactors.

Authors:  Naoki Shigi; Yuriko Sakaguchi; Shin-Ichi Asai; Tsutomu Suzuki; Kimitsuna Watanabe
Journal:  EMBO J       Date:  2008-11-27       Impact factor: 11.598

10.  tRNAdb 2009: compilation of tRNA sequences and tRNA genes.

Authors:  Frank Jühling; Mario Mörl; Roland K Hartmann; Mathias Sprinzl; Peter F Stadler; Joern Pütz
Journal:  Nucleic Acids Res       Date:  2008-10-28       Impact factor: 16.971

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  127 in total

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Authors:  Rivi Hertz; Ayala Tovy; Michael Kirschenbaum; Meirav Geffen; Tomoyoshi Nozaki; Noam Adir; Serge Ankri
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Review 2.  Diversity in mechanism and function of tRNA methyltransferases.

Authors:  William E Swinehart; Jane E Jackman
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

Review 3.  Distribution and frequencies of post-transcriptional modifications in tRNAs.

Authors:  Magdalena A Machnicka; Anna Olchowik; Henri Grosjean; Janusz M Bujnicki
Journal:  RNA Biol       Date:  2014       Impact factor: 4.652

4.  PUS7 mutations impair pseudouridylation in humans and cause intellectual disability and microcephaly.

Authors:  Ranad Shaheen; Monika Tasak; Sateesh Maddirevula; Ghada M H Abdel-Salam; Inas S M Sayed; Anas M Alazami; Tarfa Al-Sheddi; Eman Alobeid; Eric M Phizicky; Fowzan S Alkuraya
Journal:  Hum Genet       Date:  2019-02-18       Impact factor: 4.132

5.  The regulatory world of tRNA fragments beyond canonical tRNA biology.

Authors:  Norbert Polacek; Pavel Ivanov
Journal:  RNA Biol       Date:  2020-08       Impact factor: 4.652

6.  Combining tRNA sequencing methods to characterize plant tRNA expression and post-transcriptional modification.

Authors:  Jessica M Warren; Thalia Salinas-Giegé; Guillaume Hummel; Nicole L Coots; Joshua M Svendsen; Kristen C Brown; Laurence Drouard; Daniel B Sloan
Journal:  RNA Biol       Date:  2020-07-25       Impact factor: 4.652

7.  Transcriptome-Wide Mapping of RNA 5-Methylcytosine in Arabidopsis mRNAs and Noncoding RNAs.

Authors:  Rakesh David; Alice Burgess; Brian Parker; Jun Li; Kalinya Pulsford; Tennille Sibbritt; Thomas Preiss; Iain Robert Searle
Journal:  Plant Cell       Date:  2017-01-06       Impact factor: 11.277

Review 8.  Structure and function of preQ1 riboswitches.

Authors:  Catherine D Eichhorn; Mijeong Kang; Juli Feigon
Journal:  Biochim Biophys Acta       Date:  2014-05-04

9.  Unusual noncanonical intron editing is important for tRNA splicing in Trypanosoma brucei.

Authors:  Mary Anne T Rubio; Zdeněk Paris; Kirk W Gaston; Ian M C Fleming; Paul Sample; Christopher R Trotta; Juan D Alfonzo
Journal:  Mol Cell       Date:  2013-10-03       Impact factor: 17.970

10.  Retrograde transfer RNA nuclear import provides a new level of tRNA quality control in Saccharomyces cerevisiae.

Authors:  Emily B Kramer; Anita K Hopper
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-02       Impact factor: 11.205

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