Literature DB >> 19037260

Common thiolation mechanism in the biosynthesis of tRNA thiouridine and sulphur-containing cofactors.

Naoki Shigi1, Yuriko Sakaguchi, Shin-Ichi Asai, Tsutomu Suzuki, Kimitsuna Watanabe.   

Abstract

2-Thioribothymidine (s(2)T), a modified uridine, is found at position 54 in transfer RNAs (tRNAs) from several thermophiles; s(2)T stabilizes the L-shaped structure of tRNA and is essential for growth at higher temperatures. Here, we identified an ATPase (tRNA-two-thiouridine C, TtuC) required for the 2-thiolation of s(2)T in Thermus thermophilus and examined in vitro s(2)T formation by TtuC and previously identified s(2)T-biosynthetic proteins (TtuA, TtuB, and cysteine desulphurases). The C-terminal glycine of TtuB is first activated as an acyl-adenylate by TtuC and then thiocarboxylated by cysteine desulphurases. The sulphur atom of thiocarboxylated TtuB is transferred to tRNA by TtuA. In a ttuC mutant of T. thermophilus, not only s(2)T, but also molybdenum cofactor and thiamin were not synthesized, suggesting that TtuC is shared among these biosynthetic pathways. Furthermore, we found that a TtuB-TtuC thioester was formed in vitro, which was similar to the ubiquitin-E1 thioester, a key intermediate in the ubiquitin system. The results are discussed in relation to the mechanism and evolution of the eukaryotic ubiquitin system.

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Year:  2008        PMID: 19037260      PMCID: PMC2609741          DOI: 10.1038/emboj.2008.246

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  44 in total

1.  Recombination-Deficient Mutants of an Extreme Thermophile, Thermus thermophilus.

Authors:  T Takada; S Akanuma; T Kotsuka; M Tamakoshi; A Yamagishi; T Oshima
Journal:  Appl Environ Microbiol       Date:  1993-08       Impact factor: 4.792

2.  The conserved Wobble uridine tRNA thiolase Ctu1-Ctu2 is required to maintain genome integrity.

Authors:  Monique Dewez; Fanélie Bauer; Marc Dieu; Martine Raes; Jean Vandenhaute; Damien Hermand
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-07       Impact factor: 11.205

Review 3.  The ubiquitin system.

Authors:  A Hershko; A Ciechanover
Journal:  Annu Rev Biochem       Date:  1998       Impact factor: 23.643

4.  Heat-induced stability of tRNA from an extreme thermophile, Thermus thermophilus.

Authors:  K Watanabe; M Shinma; T Oshima; S Nishimura
Journal:  Biochem Biophys Res Commun       Date:  1976-10-04       Impact factor: 3.575

Review 5.  Dynamic structures and functions of transfer ribonucleic acids from extreme thermophiles.

Authors:  S Yokoyama; K Watanabe; T Miyazawa
Journal:  Adv Biophys       Date:  1987

6.  A sulfurtransferase is required in the transfer of cysteine sulfur in the in vitro synthesis of molybdopterin from precursor Z in Escherichia coli.

Authors:  S Leimkühler; K V Rajagopalan
Journal:  J Biol Chem       Date:  2001-04-04       Impact factor: 5.157

7.  molecular mechanism of lysidine synthesis that determines tRNA identity and codon recognition.

Authors:  Yoshiho Ikeuchi; Akiko Soma; Tomotake Ote; Jun-ichi Kato; Yasuhiko Sekine; Tsutomu Suzuki
Journal:  Mol Cell       Date:  2005-07-22       Impact factor: 17.970

8.  Thio modification of yeast cytosolic tRNA is an iron-sulfur protein-dependent pathway.

Authors:  Yumi Nakai; Masato Nakai; Roland Lill; Tsutomu Suzuki; Hideyuki Hayashi
Journal:  Mol Cell Biol       Date:  2007-02-05       Impact factor: 4.272

9.  The role of posttranscriptional modification in stabilization of transfer RNA from hyperthermophiles.

Authors:  J A Kowalak; J J Dalluge; J A McCloskey; K O Stetter
Journal:  Biochemistry       Date:  1994-06-28       Impact factor: 3.162

10.  The prokaryotic antecedents of the ubiquitin-signaling system and the early evolution of ubiquitin-like beta-grasp domains.

Authors:  Lakshminarayan M Iyer; A Maxwell Burroughs; L Aravind
Journal:  Genome Biol       Date:  2006       Impact factor: 13.583

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  35 in total

1.  A novel mechanism of sulfur transfer catalyzed by O-acetylhomoserine sulfhydrylase in the methionine-biosynthetic pathway of Wolinella succinogenes.

Authors:  Timothy H Tran; Kalyanaraman Krishnamoorthy; Tadhg P Begley; Steven E Ealick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-09-08

2.  Crystallographic study of the 2-thioribothymidine-synthetic complex TtuA-TtuB from Thermus thermophilus.

Authors:  Minghao Chen; Shun Narai; Naoki Omura; Naoki Shigi; Sarin Chimnaronk; Yoshikazu Tanaka; Min Yao
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2016-09-22       Impact factor: 1.056

3.  A [3Fe-4S] cluster is required for tRNA thiolation in archaea and eukaryotes.

Authors:  Yuchen Liu; David J Vinyard; Megan E Reesbeck; Tateki Suzuki; Kasidet Manakongtreecheep; Patrick L Holland; Gary W Brudvig; Dieter Söll
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-24       Impact factor: 11.205

4.  The tRNA recognition mechanism of folate/FAD-dependent tRNA methyltransferase (TrmFO).

Authors:  Ryota Yamagami; Koki Yamashita; Hiroshi Nishimasu; Chie Tomikawa; Anna Ochi; Chikako Iwashita; Akira Hirata; Ryuichiro Ishitani; Osamu Nureki; Hiroyuki Hori
Journal:  J Biol Chem       Date:  2012-10-24       Impact factor: 5.157

5.  Biochemical and structural characterization of oxygen-sensitive 2-thiouridine synthesis catalyzed by an iron-sulfur protein TtuA.

Authors:  Minghao Chen; Shin-Ichi Asai; Shun Narai; Shusuke Nambu; Naoki Omura; Yuriko Sakaguchi; Tsutomu Suzuki; Masao Ikeda-Saito; Kimitsuna Watanabe; Min Yao; Naoki Shigi; Yoshikazu Tanaka
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-24       Impact factor: 11.205

6.  Archaeal ubiquitin-like SAMP3 is isopeptide-linked to proteins via a UbaA-dependent mechanism.

Authors:  Hugo V Miranda; Haike Antelmann; Nathaniel Hepowit; Nikita E Chavarria; David J Krause; Jonathan R Pritz; Katrin Bäsell; Dörte Becher; Matthew A Humbard; Luciano Brocchieri; Julie A Maupin-Furlow
Journal:  Mol Cell Proteomics       Date:  2013-10-04       Impact factor: 5.911

7.  Archaeal ubiquitin-like proteins: functional versatility and putative ancestral involvement in tRNA modification revealed by comparative genomic analysis.

Authors:  Kira S Makarova; Eugene V Koonin
Journal:  Archaea       Date:  2010-09-26       Impact factor: 3.273

Review 8.  Prokaryotic ubiquitin-like protein modification.

Authors:  Julie A Maupin-Furlow
Journal:  Annu Rev Microbiol       Date:  2014-05-29       Impact factor: 15.500

9.  Mechanistic insight into protein modification and sulfur mobilization activities of noncanonical E1 and associated ubiquitin-like proteins of Archaea.

Authors:  Nathaniel L Hepowit; Ian Mitchelle S de Vera; Shiyun Cao; Xian Fu; Yifei Wu; Sivakumar Uthandi; Nikita E Chavarria; Markus Englert; Dan Su; Dieter Sӧll; Douglas J Kojetin; Julie A Maupin-Furlow
Journal:  FEBS J       Date:  2016-10       Impact factor: 5.542

10.  Aquifex aeolicus tRNA (N2,N2-guanine)-dimethyltransferase (Trm1) catalyzes transfer of methyl groups not only to guanine 26 but also to guanine 27 in tRNA.

Authors:  Takako Awai; Satoshi Kimura; Chie Tomikawa; Anna Ochi; Yoshitaka Bessho; Shigeyuki Yokoyama; Satoshi Ohno; Kazuya Nishikawa; Takashi Yokogawa; Tsutomu Suzuki; Hiroyuki Hori
Journal:  J Biol Chem       Date:  2009-06-02       Impact factor: 5.157

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