Literature DB >> 23125714

Bis(2-amino-pyrimidin-1-ium) sulfate.

Hui-Ling Hu1, Chun-Wei Yeh.   

Abstract

In the title compound, 2C(4)H(6)N(3) (+)·SO(4) (2-), the cations are each essentially planar with r.m.s. deviations of the fitted atoms of 0.008 and 0.002 Å. In the crystal, adjacent ions are linked by N-H⋯O, C-H⋯O and C-H⋯N hydrogen bonds, forming a three-dimensional network.

Entities:  

Year:  2012        PMID: 23125714      PMCID: PMC3470301          DOI: 10.1107/S1600536812037725

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of 2-amino­pyrimidinium salts with other anions, see: Cheng et al. (2010 ▶); Eshtiagh-Hosseini et al. (2010 ▶).

Experimental

Crystal data

2C4H6N3 +·SO4 2− M = 288.30 Monoclinic, a = 8.1215 (8) Å b = 11.4853 (12) Å c = 13.0407 (14) Å β = 97.206 (2)° V = 1206.8 (2) Å3 Z = 4 Mo Kα radiation μ = 0.29 mm−1 T = 293 K 0.45 × 0.29 × 0.16 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.880, T max = 0.955 6656 measured reflections 2377 independent reflections 1976 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.093 S = 1.05 2377 reflections 196 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.40 e Å−3 Data collection: APEX2 (Bruker, 2010 ▶); cell refinement: SAINT (Bruker, 2010 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2010 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812037725/pv2583sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812037725/pv2583Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812037725/pv2583Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C4H6N3+·SO42F(000) = 600
Mr = 288.30Dx = 1.587 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3511 reflections
a = 8.1215 (8) Åθ = 2.5–26.0°
b = 11.4853 (12) ŵ = 0.29 mm1
c = 13.0407 (14) ÅT = 293 K
β = 97.206 (2)°Plate, colourless
V = 1206.8 (2) Å30.45 × 0.29 × 0.16 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer2377 independent reflections
Radiation source: fine-focus sealed tube1976 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.032
φ & ω scansθmax = 26.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −10→10
Tmin = 0.880, Tmax = 0.955k = −14→8
6656 measured reflectionsl = −16→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.093H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0546P)2 + 0.1486P] where P = (Fo2 + 2Fc2)/3
2377 reflections(Δ/σ)max = 0.001
196 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.40 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S0.01967 (5)0.48062 (3)0.75579 (3)0.03308 (15)
C10.4028 (2)0.33089 (14)0.95900 (13)0.0353 (4)
C20.3254 (2)0.46070 (16)1.08388 (13)0.0422 (4)
H2A0.25770.52071.10190.051*
C30.4431 (2)0.41520 (16)1.15527 (15)0.0498 (5)
H3A0.46020.44311.22270.060*
C40.5372 (2)0.32455 (17)1.12244 (15)0.0507 (5)
H4A0.61830.29191.17060.061*
C50.32224 (19)0.58057 (14)0.50457 (12)0.0328 (4)
C60.4389 (2)0.72057 (15)0.40373 (14)0.0435 (4)
H6A0.44030.75830.34080.052*
C70.5485 (2)0.75007 (17)0.48542 (16)0.0514 (5)
H7A0.62710.80810.48080.062*
C80.5392 (2)0.69007 (16)0.57723 (15)0.0483 (5)
H8A0.61500.70920.63420.058*
N10.3820 (2)0.29315 (15)0.86293 (12)0.0455 (4)
H1NA0.312 (2)0.3295 (18)0.8188 (16)0.050 (6)*
H1NB0.435 (3)0.227 (2)0.8471 (16)0.065 (6)*
N20.30658 (17)0.41906 (12)0.98686 (11)0.0362 (3)
H2N0.230 (2)0.4489 (17)0.9436 (15)0.042 (5)*
N30.51952 (18)0.28162 (13)1.02800 (12)0.0458 (4)
N40.2118 (2)0.49912 (14)0.51195 (14)0.0425 (4)
H4NA0.207 (2)0.4694 (18)0.5680 (17)0.047 (6)*
H4NB0.157 (2)0.4774 (17)0.4623 (17)0.044 (6)*
N50.32700 (18)0.63601 (13)0.41351 (11)0.0365 (3)
H5N0.258 (3)0.6232 (18)0.3654 (17)0.055 (6)*
N60.43008 (17)0.60804 (13)0.58842 (11)0.0407 (4)
O10.16275 (15)0.42397 (11)0.71839 (9)0.0458 (3)
O20.06654 (16)0.51991 (11)0.86283 (9)0.0481 (3)
O3−0.03729 (15)0.57920 (10)0.68927 (9)0.0455 (3)
O4−0.11722 (15)0.39661 (11)0.75484 (9)0.0470 (3)
U11U22U33U12U13U23
S0.0389 (2)0.0320 (2)0.0269 (2)−0.00002 (16)−0.00122 (16)0.00050 (15)
C10.0331 (8)0.0321 (8)0.0402 (9)−0.0035 (6)0.0027 (7)0.0042 (7)
C20.0478 (10)0.0425 (10)0.0379 (10)−0.0031 (8)0.0115 (8)0.0015 (7)
C30.0645 (12)0.0507 (12)0.0324 (9)−0.0060 (9)−0.0003 (8)0.0056 (8)
C40.0527 (11)0.0497 (11)0.0454 (11)−0.0019 (9)−0.0103 (9)0.0149 (8)
C50.0334 (8)0.0348 (9)0.0300 (8)0.0057 (7)0.0039 (6)−0.0010 (6)
C60.0446 (10)0.0397 (10)0.0475 (10)0.0027 (8)0.0106 (8)0.0083 (8)
C70.0492 (11)0.0425 (11)0.0611 (12)−0.0085 (9)0.0010 (9)0.0039 (9)
C80.0470 (10)0.0452 (11)0.0496 (11)−0.0040 (9)−0.0064 (8)−0.0052 (9)
N10.0529 (10)0.0413 (9)0.0402 (9)0.0099 (7)−0.0023 (7)−0.0033 (7)
N20.0327 (7)0.0390 (8)0.0359 (8)0.0016 (6)0.0011 (6)0.0042 (6)
N30.0454 (8)0.0429 (9)0.0468 (9)0.0057 (7)−0.0030 (7)0.0083 (7)
N40.0437 (9)0.0510 (10)0.0318 (8)−0.0089 (7)0.0005 (7)0.0033 (7)
N50.0367 (8)0.0414 (8)0.0306 (8)0.0012 (6)0.0013 (6)0.0015 (6)
N60.0427 (8)0.0446 (9)0.0334 (7)−0.0002 (6)−0.0012 (6)−0.0012 (6)
O10.0516 (7)0.0509 (8)0.0354 (7)0.0103 (6)0.0074 (5)0.0021 (5)
O20.0541 (8)0.0532 (8)0.0334 (7)0.0134 (6)−0.0093 (5)−0.0125 (5)
O30.0528 (7)0.0358 (7)0.0451 (7)−0.0001 (5)−0.0055 (6)0.0084 (5)
O40.0518 (8)0.0488 (8)0.0387 (7)−0.0128 (6)−0.0012 (5)0.0086 (5)
S—O31.4656 (12)C5—N61.350 (2)
S—O11.4675 (13)C5—N51.352 (2)
S—O41.4709 (12)C6—C71.343 (3)
S—O21.4710 (12)C6—N51.347 (2)
C1—N11.316 (2)C6—H6A0.9300
C1—N31.347 (2)C7—C81.392 (3)
C1—N21.356 (2)C7—H7A0.9300
C2—N21.343 (2)C8—N61.314 (2)
C2—C31.353 (3)C8—H8A0.9300
C2—H2A0.9300N1—H1NA0.86 (2)
C3—C41.390 (3)N1—H1NB0.91 (2)
C3—H3A0.9300N2—H2N0.86 (2)
C4—N31.318 (2)N4—H4NA0.81 (2)
C4—H4A0.9300N4—H4NB0.78 (2)
C5—N41.308 (2)N5—H5N0.80 (2)
O3—S—O1110.49 (8)C7—C6—H6A120.2
O3—S—O4108.64 (7)N5—C6—H6A120.2
O1—S—O4109.60 (8)C6—C7—C8117.11 (17)
O3—S—O2110.46 (7)C6—C7—H7A121.4
O1—S—O2109.27 (7)C8—C7—H7A121.4
O4—S—O2108.34 (8)N6—C8—C7124.08 (17)
N1—C1—N3119.53 (16)N6—C8—H8A118.0
N1—C1—N2119.43 (16)C7—C8—H8A118.0
N3—C1—N2121.03 (16)C1—N1—H1NA118.1 (14)
N2—C2—C3119.86 (17)C1—N1—H1NB119.0 (14)
N2—C2—H2A120.1H1NA—N1—H1NB122.7 (19)
C3—C2—H2A120.1C2—N2—C1121.12 (15)
C2—C3—C4116.45 (18)C2—N2—H2N117.7 (13)
C2—C3—H3A121.8C1—N2—H2N121.2 (13)
C4—C3—H3A121.8C4—N3—C1116.88 (16)
N3—C4—C3124.65 (16)C5—N4—H4NA118.6 (14)
N3—C4—H4A117.7C5—N4—H4NB119.6 (15)
C3—C4—H4A117.7H4NA—N4—H4NB122 (2)
N4—C5—N6119.26 (15)C6—N5—C5121.10 (16)
N4—C5—N5119.79 (15)C6—N5—H5N118.3 (15)
N6—C5—N5120.95 (15)C5—N5—H5N120.4 (15)
C7—C6—N5119.64 (17)C8—N6—C5117.11 (15)
D—H···AD—HH···AD···AD—H···A
N1—H1NA···O10.86 (2)1.99 (2)2.853 (2)175.5 (17)
N1—H1NB···O3i0.91 (2)1.97 (2)2.882 (2)176.9 (2)
N2—H2N···O20.86 (2)1.79 (2)2.640 (2)174.7 (18)
N4—H4NA···O10.81 (2)2.10 (2)2.902 (2)167.6 (19)
N4—H4NB···O3ii0.78 (2)2.19 (2)2.962 (2)171.0 (2)
N5—H5N···O4ii0.80 (2)1.84 (2)2.631 (2)172.6 (2)
C2—H2A···O4iii0.932.503.295 (2)144
C3—H3A···N6iv0.932.583.382 (2)145
C4—H4A···O1v0.932.573.231 (2)128
C7—H7A···O2vi0.932.513.101 (2)121
C8—H8A···O4vii0.932.593.237 (2)127
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1NA⋯O10.86 (2)1.99 (2)2.853 (2)175.5 (17)
N1—H1NB⋯O3i 0.91 (2)1.97 (2)2.882 (2)176.9 (2)
N2—H2N⋯O20.86 (2)1.79 (2)2.640 (2)174.7 (18)
N4—H4NA⋯O10.81 (2)2.10 (2)2.902 (2)167.6 (19)
N4—H4NB⋯O3ii 0.78 (2)2.19 (2)2.962 (2)171.0 (2)
N5—H5N⋯O4ii 0.80 (2)1.84 (2)2.631 (2)172.6 (2)
C2—H2A⋯O4iii 0.932.503.295 (2)144
C3—H3A⋯N6iv 0.932.583.382 (2)145
C4—H4A⋯O1v 0.932.573.231 (2)128
C7—H7A⋯O2vi 0.932.513.101 (2)121
C8—H8A⋯O4vii 0.932.593.237 (2)127

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .

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Authors:  Hossein Eshtiagh-Hosseini; Milad Mahjoobizadeh; Masoud Mirzaei
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-04

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1.  2-Amino-4,6-dimethyl-pyrimidin-1-ium chloride.

Authors:  Hui-Ling Hu; Chun-Wei Yeh
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