Literature DB >> 21588581

2-Amino-pyrimidinium 4-hy-droxy-pyridinium-2,6-dicarboxyl-ate monohydrate.

Hossein Eshtiagh-Hosseini1, Milad Mahjoobizadeh, Masoud Mirzaei.   

Abstract

In the crystal structure of the title compound, C(4)H(6)N(3) (+)·C(7)H(4)NO(5) (-)·H(2)O, inter-molecular N-H⋯N, N-H⋯O and O-H⋯O hydrogen bonds link the cations and anions into almost planar sheets parallel to (102). These hydrogen-bonded sheets are packed into the crystal with the formation of centrosymmetric voids of 68 Å(3), which are filled by the water mol-ecules, each of which is disordered over four positions.

Entities:  

Year:  2010        PMID: 21588581      PMCID: PMC3008026          DOI: 10.1107/S1600536810029533

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Aghabozorg et al. (2008 ▶); Moghimi et al. (2005 ▶); Hall et al. (2000 ▶); Lynch & Jones (2004 ▶); Eshtiagh-Hosseini et al. (2010 ▶); Smith et al. (2006a ▶,b ▶). For hydrogen bonding, see: Desiraju (1989 ▶).

Experimental

Crystal data

C4H6N3C7H4NO5 −·H2O M = 296.25 Monoclinic, a = 17.822 (2) Å b = 12.2233 (14) Å c = 12.0676 (14) Å β = 103.345 (2)° V = 2557.8 (5) Å3 Z = 8 Mo Kα radiation μ = 0.13 mm−1 T = 100 K 0.20 × 0.20 × 0.15 mm

Data collection

Bruker SMART APEXII CCD area detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.970, T max = 0.983 14881 measured reflections 3383 independent reflections 2703 reflections with I > 2/s(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.134 S = 0.90 3383 reflections 203 parameters 13 restraints H-atom parameters constrained Δρmax = 0.45 e Å−3 Δρmin = −0.33 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810029533/cv2745sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810029533/cv2745Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H6N3+·C7H4NO5·H2OF(000) = 1232
Mr = 296.25Dx = 1.539 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 2135 reflections
a = 17.822 (2) Åθ = 3–30°
b = 12.2233 (14) ŵ = 0.13 mm1
c = 12.0676 (14) ÅT = 100 K
β = 103.345 (2)°Prism, colourless
V = 2557.8 (5) Å30.20 × 0.20 × 0.15 mm
Z = 8
Bruker SMART APEXII CCD area detector diffractometer3383 independent reflections
Radiation source: fine-focus sealed tube2703 reflections with I > 2/s(I)
graphiteRint = 0.031
phi and ω scansθmax = 29.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −24→24
Tmin = 0.970, Tmax = 0.983k = −16→16
14881 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: mixed
wR(F2) = 0.134H-atom parameters constrained
S = 0.90w = 1/[σ2(Fo2) + (0.0847P)2 + 2.9446P] where P = (Fo2 + 2Fc2)/3
3383 reflections(Δ/σ)max = 0.002
203 parametersΔρmax = 0.45 e Å3
13 restraintsΔρmin = −0.33 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
N11.14962 (8)−0.04289 (11)0.20255 (13)0.0224 (3)
H1N1.16180.03080.20200.027*
O11.04750 (7)0.11863 (10)0.14699 (12)0.0282 (3)
O20.94910 (7)−0.00108 (11)0.09859 (11)0.0285 (3)
O31.08809 (7)−0.36262 (10)0.17357 (11)0.0255 (3)
H3O1.1310−0.41040.19040.031*
O41.29127 (7)0.02724 (11)0.27479 (14)0.0350 (4)
O51.33747 (7)−0.14137 (11)0.32416 (14)0.0373 (4)
C11.01849 (10)0.02443 (14)0.13234 (15)0.0239 (3)
C21.07491 (9)−0.06993 (14)0.16221 (14)0.0208 (3)
C31.05349 (9)−0.17748 (14)0.15300 (13)0.0197 (3)
H3A1.0009−0.19670.12440.024*
C41.10958 (9)−0.25973 (13)0.18601 (14)0.0197 (3)
C51.18672 (9)−0.22748 (13)0.23042 (14)0.0207 (3)
H5A1.2257−0.28100.25510.025*
C61.20497 (9)−0.11862 (13)0.23764 (15)0.0222 (3)
C71.28608 (10)−0.07533 (15)0.28376 (17)0.0290 (4)
N20.82237 (8)0.35778 (12)0.04751 (13)0.0223 (3)
N30.94887 (8)0.28765 (12)0.10759 (12)0.0206 (3)
H3N0.98070.22730.12740.025*
N40.84352 (8)0.17156 (12)0.06968 (13)0.0233 (3)
H4NA0.87550.11310.08430.028*
H4NB0.79310.16390.04250.028*
C80.87116 (9)0.27213 (13)0.07514 (14)0.0194 (3)
C90.85244 (10)0.45737 (14)0.05743 (15)0.0244 (4)
H9A0.81840.51800.03960.029*
C100.93171 (10)0.47828 (14)0.09281 (15)0.0247 (4)
H10A0.95150.55080.10040.030*
C110.97917 (9)0.38928 (15)0.11582 (14)0.0227 (3)
H11A1.03350.39900.13760.027*
O1W0.8160 (2)0.8577 (4)−0.0224 (4)0.0257 (5)0.292 (3)
H1WA0.84680.81150.01980.031*0.292 (3)
H1WB0.80550.90960.02230.031*0.292 (3)
O2W0.8104 (3)0.9291 (4)0.0129 (4)0.0257 (5)0.249 (3)
H2WA0.85440.94960.05130.031*0.249 (3)
H2WB0.81780.8757−0.02860.031*0.249 (3)
O3W0.8024 (3)0.7046 (4)0.0112 (5)0.0257 (5)0.236 (3)
H3WA0.81880.7058−0.04960.031*0.236 (3)
H3WB0.75710.6781−0.00540.031*0.236 (3)
O4W0.8561 (3)0.7918 (5)0.0081 (5)0.0257 (5)0.224 (3)
H4WA0.81320.8099−0.03540.031*0.224 (3)
H4WB0.88530.84780.01570.031*0.224 (3)
U11U22U33U12U13U23
N10.0147 (6)0.0179 (6)0.0343 (8)0.0014 (5)0.0046 (5)−0.0010 (5)
O10.0217 (6)0.0226 (6)0.0404 (7)0.0071 (5)0.0073 (5)0.0056 (5)
O20.0163 (6)0.0317 (7)0.0376 (7)0.0079 (5)0.0064 (5)0.0096 (5)
O30.0164 (5)0.0187 (6)0.0386 (7)−0.0016 (4)0.0010 (5)0.0032 (5)
O40.0188 (6)0.0212 (6)0.0616 (9)−0.0020 (5)0.0024 (6)−0.0111 (6)
O50.0145 (6)0.0261 (7)0.0649 (10)0.0030 (5)−0.0041 (6)−0.0122 (6)
C10.0192 (8)0.0243 (8)0.0292 (8)0.0072 (6)0.0077 (6)0.0066 (6)
C20.0144 (7)0.0233 (8)0.0245 (8)0.0042 (6)0.0041 (6)0.0023 (6)
C30.0127 (7)0.0233 (8)0.0223 (7)0.0006 (6)0.0027 (5)0.0014 (6)
C40.0156 (7)0.0211 (7)0.0218 (7)−0.0011 (6)0.0031 (6)0.0014 (6)
C50.0139 (7)0.0195 (7)0.0270 (8)0.0024 (5)0.0010 (6)−0.0010 (6)
C60.0132 (7)0.0208 (7)0.0311 (8)0.0021 (6)0.0018 (6)−0.0039 (6)
C70.0151 (7)0.0234 (8)0.0460 (11)−0.0010 (6)0.0020 (7)−0.0125 (7)
N20.0139 (6)0.0213 (7)0.0301 (7)0.0010 (5)0.0018 (5)0.0020 (5)
N30.0112 (6)0.0252 (7)0.0235 (7)0.0014 (5)0.0001 (5)0.0016 (5)
N40.0119 (6)0.0206 (7)0.0351 (8)0.0015 (5)0.0008 (5)0.0035 (6)
C80.0128 (7)0.0220 (7)0.0220 (7)0.0010 (5)0.0015 (6)0.0017 (6)
C90.0179 (8)0.0225 (8)0.0314 (9)0.0018 (6)0.0025 (6)0.0023 (6)
C100.0189 (8)0.0244 (8)0.0297 (8)−0.0034 (6)0.0031 (6)0.0002 (6)
C110.0139 (7)0.0298 (8)0.0231 (8)−0.0037 (6)0.0015 (6)0.0003 (6)
O1W0.0201 (11)0.0265 (12)0.0296 (13)−0.0109 (9)0.0042 (9)−0.0058 (10)
O2W0.0201 (11)0.0265 (12)0.0296 (13)−0.0109 (9)0.0042 (9)−0.0058 (10)
O3W0.0201 (11)0.0265 (12)0.0296 (13)−0.0109 (9)0.0042 (9)−0.0058 (10)
O4W0.0201 (11)0.0265 (12)0.0296 (13)−0.0109 (9)0.0042 (9)−0.0058 (10)
N1—C61.348 (2)N3—C111.349 (2)
N1—C21.349 (2)N3—C81.363 (2)
N1—H1N0.9263N3—H3N0.9273
O1—C11.258 (2)N4—C81.320 (2)
O2—C11.249 (2)N4—H4NA0.9056
O3—C41.3131 (19)N4—H4NB0.8882
O3—H3O0.9466C9—C101.402 (2)
O4—C71.264 (2)C9—H9A0.9500
O5—C71.234 (2)C10—C111.367 (2)
C1—C21.518 (2)C10—H10A0.9500
C2—C31.366 (2)C11—H11A0.9500
C3—C41.409 (2)O1W—H1WA0.8664
C3—H3A0.9500O1W—H1WB0.8805
C4—C51.411 (2)O2W—H2WA0.8508
C5—C61.368 (2)O2W—H2WB0.8509
C5—H5A0.9500O3W—H3WA0.8500
C6—C71.519 (2)O3W—H3WB0.8501
N2—C91.324 (2)O4W—H4WA0.8501
N2—C81.353 (2)O4W—H4WB0.8523
C6—N1—C2122.33 (15)O4—C7—C6113.36 (15)
C6—N1—H1N121.0C9—N2—C8117.74 (14)
C2—N1—H1N116.7C11—N3—C8120.82 (14)
C4—O3—H3O111.5C11—N3—H3N120.2
O2—C1—O1128.19 (15)C8—N3—H3N119.0
O2—C1—C2116.07 (15)C8—N4—H4NA121.0
O1—C1—C2115.72 (15)C8—N4—H4NB116.8
N1—C2—C3119.94 (14)H4NA—N4—H4NB121.7
N1—C2—C1116.36 (15)N4—C8—N2119.81 (14)
C3—C2—C1123.68 (14)N4—C8—N3119.12 (14)
C2—C3—C4119.80 (14)N2—C8—N3121.07 (15)
C2—C3—H3A120.1N2—C9—C10123.61 (15)
C4—C3—H3A120.1N2—C9—H9A118.2
O3—C4—C3118.81 (14)C10—C9—H9A118.2
O3—C4—C5122.94 (14)C11—C10—C9116.72 (16)
C3—C4—C5118.25 (15)C11—C10—H10A121.6
C6—C5—C4119.49 (14)C9—C10—H10A121.6
C6—C5—H5A120.3N3—C11—C10119.98 (15)
C4—C5—H5A120.3N3—C11—H11A120.0
N1—C6—C5120.14 (15)C10—C11—H11A120.0
N1—C6—C7116.19 (15)H1WA—O1W—H1WB107.7
C5—C6—C7123.67 (14)H2WA—O2W—H2WB107.3
O5—C7—O4128.37 (16)H3WA—O3W—H3WB107.4
O5—C7—C6118.28 (16)H4WA—O4W—H4WB107.2
C6—N1—C2—C3−1.8 (3)C4—C5—C6—N10.0 (3)
C6—N1—C2—C1176.57 (15)C4—C5—C6—C7−179.86 (16)
O2—C1—C2—N1−177.73 (15)N1—C6—C7—O5175.00 (18)
O1—C1—C2—N10.9 (2)C5—C6—C7—O5−5.1 (3)
O2—C1—C2—C30.5 (2)N1—C6—C7—O4−5.0 (2)
O1—C1—C2—C3179.14 (16)C5—C6—C7—O4174.86 (17)
N1—C2—C3—C40.2 (2)C9—N2—C8—N4178.06 (16)
C1—C2—C3—C4−178.04 (15)C9—N2—C8—N3−2.6 (2)
C2—C3—C4—O3−178.17 (15)C11—N3—C8—N4−178.99 (15)
C2—C3—C4—C51.4 (2)C11—N3—C8—N21.7 (2)
O3—C4—C5—C6178.07 (16)C8—N2—C9—C101.2 (3)
C3—C4—C5—C6−1.5 (2)N2—C9—C10—C111.2 (3)
C2—N1—C6—C51.7 (3)C8—N3—C11—C100.8 (2)
C2—N1—C6—C7−178.45 (16)C9—C10—C11—N3−2.1 (2)
D—H···AD—HH···AD···AD—H···A
N4—H4NA···O20.911.902.795 (2)172
N1—H1N···O10.932.262.6639 (19)105
N1—H1N···O40.932.272.618 (2)101
N4—H4NB···N2i0.892.112.990 (2)171
N3—H3N···O10.931.762.683 (2)171
O3—H3O···O4ii0.951.552.4910 (19)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4NA⋯O20.911.902.795 (2)172
N4—H4NB⋯N2i0.892.112.990 (2)171
N3—H3N⋯O10.931.762.683 (2)171
O3—H3O⋯O4ii0.951.552.4910 (19)171

Symmetry codes: (i) ; (ii) .

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