Literature DB >> 21580017

2-Amino-pyrimidinium nitrate.

Xiao-Li Cheng, Shan Gao, Seik Weng Ng.   

Abstract

In the title compound, C(4)H(6)N(3) (+)·NO(3) (-), the cation is coplanar with the anion (r.m.s. deviation = 0.048 Å), and links to the anion via an N-H⋯O hydrogen bond, forming an ion pair. In the crystal, adjacent ion pairs are further linked by N-H⋯O hydrogen bonds into linear chains running along the b axis.

Entities:  

Year:  2009        PMID: 21580017      PMCID: PMC2980124          DOI: 10.1107/S1600536809052362

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of the 2-amino­pyrimidinium salts of other mineral acids, see: Czupiński et al. (2005 ▶); Lee et al. (2003 ▶); Ye et al. (2002 ▶).

Experimental

Crystal data

C4H6N3 +·NO3 M = 158.13 Monoclinic, a = 12.632 (2) Å b = 6.2160 (8) Å c = 17.727 (2) Å β = 99.009 (3)° V = 1374.8 (3) Å3 Z = 8 Mo Kα radiation μ = 0.13 mm−1 T = 293 K 0.25 × 0.20 × 0.15 mm

Data collection

Rigaku R-AXIS RAPID IP diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.968, T max = 0.981 5139 measured reflections 1210 independent reflections 823 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.120 S = 0.99 1210 reflections 124 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.15 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalClear (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809052362/xu2705sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809052362/xu2705Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H6N3+·NO3F(000) = 656
Mr = 158.13Dx = 1.528 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 3773 reflections
a = 12.632 (2) Åθ = 3.3–27.5°
b = 6.2160 (8) ŵ = 0.13 mm1
c = 17.727 (2) ÅT = 293 K
β = 99.009 (3)°Prism, colorless
V = 1374.8 (3) Å30.25 × 0.20 × 0.15 mm
Z = 8
Rigaku R-AXIS RAPID IP diffractometer1210 independent reflections
Radiation source: fine-focus sealed tube823 reflections with I > 2σ(I)
graphiteRint = 0.028
ω scanθmax = 25.0°, θmin = 3.3°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −14→14
Tmin = 0.968, Tmax = 0.981k = −7→7
5139 measured reflectionsl = −21→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.120H atoms treated by a mixture of independent and constrained refinement
S = 0.99w = 1/[σ2(Fo2) + (0.0773P)2] where P = (Fo2 + 2Fc2)/3
1210 reflections(Δ/σ)max = 0.001
124 parametersΔρmax = 0.19 e Å3
6 restraintsΔρmin = −0.15 e Å3
xyzUiso*/Ueq
O10.61627 (16)1.0844 (3)0.47003 (8)0.0892 (6)
O20.63012 (12)1.3264 (2)0.38605 (8)0.0711 (5)
O30.61420 (14)0.9926 (3)0.35358 (9)0.0797 (5)
N10.62478 (13)0.3594 (3)0.59174 (10)0.0568 (5)
N20.62700 (13)0.7155 (3)0.63460 (9)0.0575 (5)
N30.62544 (15)0.6380 (3)0.50731 (10)0.0633 (5)
N40.62009 (13)1.1341 (3)0.40181 (9)0.0560 (5)
C10.62639 (15)0.5716 (3)0.57800 (10)0.0501 (5)
C20.62721 (17)0.6376 (4)0.70374 (12)0.0616 (6)
C30.62702 (18)0.4200 (4)0.72104 (13)0.0669 (6)
C40.62560 (17)0.2810 (4)0.66282 (13)0.0638 (6)
H10.6222 (17)0.268 (3)0.5539 (10)0.074 (7)*
H110.6213 (19)0.7733 (19)0.4964 (16)0.083 (8)*
H120.6282 (16)0.547 (3)0.4718 (9)0.068 (7)*
H20.6222 (18)0.749 (3)0.7401 (13)0.079 (7)*
H30.628 (2)0.378 (4)0.7724 (10)0.087 (7)*
H40.6234 (17)0.130 (3)0.6655 (12)0.068 (6)*
U11U22U33U12U13U23
O10.1669 (17)0.0547 (10)0.0505 (9)0.0094 (10)0.0311 (9)0.0031 (7)
O20.1061 (12)0.0523 (10)0.0576 (9)−0.0043 (8)0.0217 (8)0.0025 (7)
O30.1178 (13)0.0620 (11)0.0620 (9)−0.0010 (9)0.0227 (8)−0.0182 (8)
N10.0695 (11)0.0435 (11)0.0575 (10)0.0026 (7)0.0104 (8)−0.0033 (8)
N20.0713 (11)0.0478 (10)0.0543 (9)0.0030 (8)0.0126 (8)−0.0039 (8)
N30.0928 (13)0.0486 (13)0.0504 (10)0.0032 (9)0.0174 (9)−0.0014 (8)
N40.0677 (10)0.0512 (11)0.0506 (10)0.0046 (8)0.0144 (8)−0.0020 (8)
C10.0535 (11)0.0447 (12)0.0520 (10)0.0022 (8)0.0077 (8)−0.0022 (8)
C20.0742 (14)0.0584 (15)0.0533 (12)0.0030 (10)0.0131 (10)−0.0047 (10)
C30.0787 (15)0.0674 (15)0.0559 (12)0.0022 (11)0.0146 (11)0.0062 (12)
C40.0736 (14)0.0500 (14)0.0676 (13)0.0011 (10)0.0104 (11)0.0089 (11)
O1—N41.257 (2)N3—C11.318 (3)
O2—N41.239 (2)N3—H110.86 (1)
O3—N41.221 (2)N3—H120.85 (1)
N1—C11.342 (2)C2—C31.387 (3)
N1—C41.350 (3)C2—H20.953 (16)
N1—H10.87 (1)C3—C41.344 (3)
N2—C21.318 (3)C3—H30.944 (17)
N2—C11.344 (2)C4—H40.942 (16)
C1—N1—C4121.76 (19)N3—C1—N2119.96 (19)
C1—N1—H1119.8 (16)N1—C1—N2121.17 (18)
C4—N1—H1118.4 (17)N2—C2—C3124.4 (2)
C2—N2—C1116.65 (18)N2—C2—H2111.8 (15)
C1—N3—H11120.6 (19)C3—C2—H2123.6 (15)
C1—N3—H12120.0 (16)C4—C3—C2117.2 (2)
H11—N3—H12119 (3)C4—C3—H3123.9 (16)
O3—N4—O2122.31 (17)C2—C3—H3118.9 (15)
O3—N4—O1119.30 (18)C3—C4—N1118.8 (2)
O2—N4—O1118.39 (16)C3—C4—H4126.9 (13)
N3—C1—N1118.86 (18)N1—C4—H4114.3 (13)
C4—N1—C1—N3−179.98 (18)C1—N2—C2—C30.1 (3)
C4—N1—C1—N2−1.2 (3)N2—C2—C3—C4−0.6 (3)
C2—N2—C1—N3179.55 (19)C2—C3—C4—N10.2 (3)
C2—N2—C1—N10.8 (3)C1—N1—C4—C30.6 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.87 (1)1.87 (1)2.742 (2)177 (2)
N3—H11···O10.86 (1)1.99 (1)2.850 (3)178 (2)
N3—H12···O2i0.85 (1)2.05 (1)2.901 (2)178 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.87 (1)1.87 (1)2.742 (2)177 (2)
N3—H11⋯O10.86 (1)1.99 (1)2.850 (3)178 (2)
N3—H12⋯O2i0.85 (1)2.05 (1)2.901 (2)178 (2)

Symmetry code: (i) .

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