Literature DB >> 23125628

N'-[(E)-5-Bromo-2-hy-droxy-3-meth-oxy-benzyl-idene]-4-meth-oxy-benzohydrazide monohydrate.

P R Reshma1, M Sithambaresan, M R Prathapachandra Kurup.   

Abstract

In the title compound, C(16)H(15)Brn class="Chemical">N(2)O(4)·H(2)O, the hydrazide mol-ecule is nearly planar, with a largest deviation from the mean plane through the non-H atoms of 0.106 (4) Å and a dihedral angle between the benzene rings of 1.98 (16)°. This mol-ecule adopts an E conformation about the C=N bond and an intra-molecular O-H⋯N hydrogen bond increases the rigidity. In the crystal, some mol-ecules of the title hydrazide are replaced by mol-ecules of its 6-bromo isomer, and the Br atom from this admixture mol-ecule was refined to give a partial occupancy of 0.0523 (13). The hydrazide and water mol-ecules are linked through classical N-H⋯O and O-H⋯O hydrogen bonds, forming layers parallel to (110). C-H⋯π inter-actions are also present.

Entities:  

Year:  2012        PMID: 23125628      PMCID: PMC3470184          DOI: 10.1107/S1600536812033806

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of hydrazone compounds, see: Metwally et al. (2006 ▶); Cukurovali et al. (2006 ▶). For the synthesis of related compounds, see: Emmanuel et al. (2011 ▶); Mangalam & Kurup (2011 ▶). For standard bond lengths, see: Allen et al. (1987 ▶). For related structures, see: Tan (2012 ▶); Hou & Bi (2012 ▶); Shen et al. (2012 ▶).

Experimental

Crystal data

C16H15BrN2O4·n class="Chemical">H2O M = 397.22 Monoclinic, a = 4.9730 (4) Å b = 13.5721 (12) Å c = 24.907 (2) Å β = 90.921 (4)° V = 1680.8 (2) Å3 Z = 4 Mo Kα radiation μ = 2.47 mm−1 T = 296 K 0.40 × 0.30 × 0.25 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.414, T max = 0.539 12692 measured reflections 2939 independent reflections 2268 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.094 S = 1.06 2939 reflections 247 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.52 e Å−3 Δρmin = −0.34 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2010 ▶); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812033806/yk2067sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812033806/yk2067Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812033806/yk2067Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H15BrN2O4·H2OF(000) = 808
Mr = 397.22Dx = 1.570 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4929 reflections
a = 4.9730 (4) Åθ = 2.9–25.6°
b = 13.5721 (12) ŵ = 2.47 mm1
c = 24.907 (2) ÅT = 296 K
β = 90.921 (4)°Block, brown
V = 1680.8 (2) Å30.40 × 0.30 × 0.25 mm
Z = 4
Bruker Kappa APEXII CCD area-detector diffractometer2939 independent reflections
Radiation source: fine-focus sealed tube2268 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.036
Detector resolution: 8.33 pixels mm-1θmax = 25.0°, θmin = 2.9°
ω and φ scanh = −5→5
Absorption correction: multi-scan (SADABS; Bruker, 2007)k = −16→16
Tmin = 0.414, Tmax = 0.539l = −29→29
12692 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.094H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.043P)2 + 0.7865P] where P = (Fo2 + 2Fc2)/3
2939 reflections(Δ/σ)max < 0.001
247 parametersΔρmax = 0.52 e Å3
6 restraintsΔρmin = −0.34 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O1W0.6146 (7)0.53984 (18)0.20575 (11)0.0857 (8)
H1W0.479 (6)0.521 (3)0.1873 (16)0.129*
H2W0.651 (9)0.496 (2)0.2293 (14)0.129*
Br1A0.86593 (7)0.06757 (2)0.072139 (15)0.06810 (16)0.9477 (13)
H1A0.476 (8)0.0862 (12)0.1601 (13)0.058 (11)*0.9477 (13)
Br1B0.5677 (14)0.0463 (4)0.1799 (3)0.064 (3)0.0523 (13)
H1B0.76300.12000.08800.058 (11)*0.0523 (13)
O10.5501 (5)0.43453 (15)0.08852 (9)0.0653 (6)
O20.2111 (4)0.39584 (17)0.16439 (9)0.0629 (6)
O3−0.2919 (5)0.39947 (18)0.27910 (10)0.0789 (7)
O4−1.0445 (4)0.21328 (16)0.45317 (8)0.0616 (6)
N10.0049 (5)0.2680 (2)0.22932 (9)0.0554 (6)
N2−0.1688 (5)0.2415 (2)0.26906 (9)0.0528 (6)
C10.4937 (6)0.1490 (2)0.14527 (12)0.0534 (7)
C20.6652 (6)0.1699 (2)0.10475 (11)0.0502 (7)
C30.6936 (6)0.2646 (2)0.08475 (11)0.0514 (7)
H30.81490.27750.05760.062*
C40.5407 (6)0.3389 (2)0.10554 (11)0.0489 (7)
C50.3586 (5)0.3192 (2)0.14656 (11)0.0478 (7)
C60.3366 (6)0.2237 (2)0.16659 (11)0.0492 (7)
C70.1512 (6)0.1998 (2)0.20906 (11)0.0559 (7)
H70.13820.13540.22160.067*
C8−0.3172 (6)0.3134 (2)0.29184 (11)0.0511 (7)
C9−0.5107 (5)0.2833 (2)0.33332 (10)0.0444 (6)
C10−0.6695 (6)0.3560 (2)0.35495 (12)0.0514 (7)
H10−0.65320.42020.34240.062*
C11−0.8522 (6)0.3363 (2)0.39472 (12)0.0514 (7)
H11−0.95680.38660.40880.062*
C12−0.8775 (5)0.2411 (2)0.41334 (11)0.0459 (7)
C13−0.7265 (6)0.1670 (2)0.39097 (12)0.0530 (7)
H13−0.74890.10240.40250.064*
C14−0.5433 (6)0.1873 (2)0.35177 (12)0.0515 (7)
H14−0.44060.13670.33750.062*
C150.7560 (7)0.4612 (2)0.05349 (14)0.0685 (9)
H15A0.92700.44370.06920.103*
H15B0.75030.53100.04730.103*
H15C0.73170.42720.02000.103*
C16−1.2105 (6)0.2868 (3)0.47648 (13)0.0702 (9)
H16A−1.09980.33870.49080.105*
H16B−1.31320.25810.50480.105*
H16C−1.33050.31310.44950.105*
H21−0.165 (7)0.1796 (9)0.2766 (13)0.067 (10)*
H20.116 (8)0.375 (4)0.1910 (13)0.130 (18)*
U11U22U33U12U13U23
O1W0.122 (2)0.0518 (14)0.0830 (19)−0.0127 (14)−0.0071 (16)0.0124 (12)
Br1A0.0682 (2)0.0490 (2)0.0875 (3)0.00715 (17)0.01531 (18)−0.00284 (18)
Br1B0.080 (5)0.040 (4)0.072 (5)−0.002 (3)−0.010 (3)0.004 (3)
O10.0735 (14)0.0462 (12)0.0770 (14)0.0028 (10)0.0238 (12)0.0056 (11)
O20.0632 (14)0.0619 (13)0.0643 (14)0.0019 (11)0.0177 (11)−0.0062 (11)
O30.0930 (18)0.0588 (14)0.0854 (17)0.0022 (13)0.0209 (14)0.0284 (12)
O40.0562 (12)0.0676 (14)0.0615 (12)0.0041 (11)0.0159 (10)0.0053 (11)
N10.0516 (14)0.0730 (18)0.0415 (13)−0.0144 (13)0.0024 (11)0.0006 (12)
N20.0566 (15)0.0569 (17)0.0453 (13)−0.0085 (13)0.0100 (11)0.0035 (12)
C10.0563 (18)0.0503 (18)0.0536 (17)−0.0071 (15)0.0001 (14)0.0039 (15)
C20.0459 (16)0.0512 (17)0.0536 (17)−0.0003 (13)−0.0002 (13)−0.0052 (14)
C30.0462 (16)0.0546 (18)0.0535 (17)−0.0059 (14)0.0074 (13)−0.0012 (14)
C40.0508 (16)0.0435 (16)0.0526 (16)−0.0040 (13)0.0049 (13)−0.0019 (13)
C50.0460 (15)0.0545 (18)0.0431 (15)−0.0040 (13)0.0025 (12)−0.0071 (13)
C60.0466 (16)0.0577 (18)0.0434 (15)−0.0107 (14)−0.0012 (12)−0.0007 (13)
C70.0575 (18)0.0621 (19)0.0481 (16)−0.0116 (16)0.0041 (14)0.0027 (15)
C80.0568 (17)0.0482 (18)0.0483 (16)−0.0048 (14)−0.0034 (13)0.0089 (14)
C90.0444 (15)0.0444 (15)0.0442 (15)−0.0014 (12)−0.0037 (12)0.0050 (12)
C100.0540 (17)0.0422 (16)0.0579 (17)0.0009 (13)−0.0047 (14)0.0044 (13)
C110.0476 (16)0.0480 (17)0.0586 (18)0.0083 (13)−0.0014 (14)−0.0048 (14)
C120.0390 (14)0.0509 (17)0.0478 (15)0.0006 (12)−0.0022 (12)0.0001 (13)
C130.0577 (17)0.0416 (16)0.0600 (18)−0.0024 (13)0.0070 (14)0.0041 (13)
C140.0557 (17)0.0428 (16)0.0562 (17)0.0023 (13)0.0092 (14)0.0008 (13)
C150.074 (2)0.0533 (19)0.079 (2)−0.0056 (16)0.0200 (18)0.0094 (17)
C160.0533 (19)0.093 (3)0.065 (2)0.0132 (18)0.0134 (16)−0.0010 (18)
O1W—H1W0.85 (3)C5—C61.394 (4)
O1W—H2W0.86 (3)C6—C71.451 (4)
Br1A—C21.901 (3)C7—H70.9300
O1—C41.366 (3)C8—C91.480 (4)
O1—C151.404 (4)C9—C101.379 (4)
O2—C51.352 (3)C9—C141.393 (4)
O2—H20.87 (3)C10—C111.381 (4)
O3—C81.217 (3)C10—H100.9300
O4—C121.357 (3)C11—C121.379 (4)
O4—C161.425 (4)C11—H110.9300
N1—C71.285 (4)C12—C131.378 (4)
N1—N21.372 (3)C13—C141.374 (4)
N2—C81.353 (4)C13—H130.9300
N2—H210.861 (14)C14—H140.9300
C1—C21.362 (4)C15—H15A0.9600
C1—C61.390 (4)C15—H15B0.9600
C1—H1A0.93 (4)C15—H15C0.9600
C2—C31.386 (4)C16—H16A0.9600
C3—C41.370 (4)C16—H16B0.9600
C3—H30.9300C16—H16C0.9600
C4—C51.402 (4)
H1W—O1W—H2W108 (2)N2—C8—C9117.3 (2)
C4—O1—C15117.8 (2)C10—C9—C14118.0 (3)
C5—O2—H2108 (3)C10—C9—C8117.3 (2)
C12—O4—C16117.9 (2)C14—C9—C8124.7 (3)
C7—N1—N2117.5 (3)C9—C10—C11122.0 (3)
C8—N2—N1117.9 (3)C9—C10—H10119.0
C8—N2—H21128 (2)C11—C10—H10119.0
N1—N2—H21114 (2)C12—C11—C10119.2 (3)
C2—C1—C6119.6 (3)C12—C11—H11120.4
C2—C1—H1A123 (2)C10—C11—H11120.4
C6—C1—H1A117 (2)O4—C12—C13115.9 (3)
C1—C2—C3121.9 (3)O4—C12—C11124.5 (3)
C1—C2—Br1A120.3 (2)C13—C12—C11119.6 (3)
C3—C2—Br1A117.8 (2)C14—C13—C12120.8 (3)
C4—C3—C2119.1 (3)C14—C13—H13119.6
C4—C3—H3120.5C12—C13—H13119.6
C2—C3—H3120.5C13—C14—C9120.3 (3)
O1—C4—C3124.1 (2)C13—C14—H14119.9
O1—C4—C5115.7 (2)C9—C14—H14119.9
C3—C4—C5120.3 (3)O1—C15—H15A109.5
O2—C5—C6123.5 (2)O1—C15—H15B109.5
O2—C5—C4116.9 (3)H15A—C15—H15B109.5
C6—C5—C4119.6 (3)O1—C15—H15C109.5
C1—C6—C5119.6 (3)H15A—C15—H15C109.5
C1—C6—C7118.9 (3)H15B—C15—H15C109.5
C5—C6—C7121.5 (3)O4—C16—H16A109.5
N1—C7—C6119.7 (3)O4—C16—H16B109.5
N1—C7—H7120.1H16A—C16—H16B109.5
C6—C7—H7120.1O4—C16—H16C109.5
O3—C8—N2121.5 (3)H16A—C16—H16C109.5
O3—C8—C9121.2 (3)H16B—C16—H16C109.5
C7—N1—N2—C8177.9 (3)C1—C6—C7—N1179.8 (3)
C6—C1—C2—C31.7 (5)C5—C6—C7—N1−0.7 (4)
C6—C1—C2—Br1A−176.3 (2)N1—N2—C8—O3−2.6 (4)
C1—C2—C3—C4−1.4 (4)N1—N2—C8—C9177.9 (2)
Br1A—C2—C3—C4176.5 (2)O3—C8—C9—C103.1 (4)
C15—O1—C4—C3−10.0 (4)N2—C8—C9—C10−177.4 (2)
C15—O1—C4—C5170.6 (3)O3—C8—C9—C14−177.1 (3)
C2—C3—C4—O1−179.3 (3)N2—C8—C9—C142.4 (4)
C2—C3—C4—C50.1 (4)C14—C9—C10—C111.6 (4)
O1—C4—C5—O20.6 (4)C8—C9—C10—C11−178.5 (3)
C3—C4—C5—O2−178.8 (3)C9—C10—C11—C12−0.2 (4)
O1—C4—C5—C6−179.7 (3)C16—O4—C12—C13−178.2 (3)
C3—C4—C5—C60.9 (4)C16—O4—C12—C111.8 (4)
C2—C1—C6—C5−0.6 (4)C10—C11—C12—O4178.2 (3)
C2—C1—C6—C7178.8 (3)C10—C11—C12—C13−1.9 (4)
O2—C5—C6—C1179.0 (3)O4—C12—C13—C14−177.5 (3)
C4—C5—C6—C1−0.6 (4)C11—C12—C13—C142.5 (4)
O2—C5—C6—C7−0.4 (4)C12—C13—C14—C9−1.1 (4)
C4—C5—C6—C7179.9 (3)C10—C9—C14—C13−0.9 (4)
N2—N1—C7—C6179.5 (2)C8—C9—C14—C13179.2 (3)
D—H···AD—HH···AD···AD—H···A
N2—H21···O1Wi0.86 (1)1.96 (2)2.820 (4)174 (3)
O2—H2···N10.87 (3)1.83 (3)2.595 (3)146 (5)
O1W—H1W···O20.85 (3)2.23 (3)2.974 (4)147 (4)
O1W—H2W···O3ii0.86 (3)1.82 (3)2.675 (3)177 (4)
C16—H16C···Cg2iii0.962.703.517 (3)144
Table 1

Hydrogen-bond geometry (Å, °)

Cg2 is the centroid of the C9–C14 benzene ring

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H21⋯O1W i 0.86 (1)1.96 (2)2.820 (4)174 (3)
O2—H2⋯N10.87 (3)1.83 (3)2.595 (3)146 (5)
O1W—H1W⋯O20.85 (3)2.23 (3)2.974 (4)147 (4)
O1W—H2W⋯O3ii 0.86 (3)1.82 (3)2.675 (3)177 (4)
C16—H16CCg2iii 0.962.703.517 (3)144

Symmetry codes: (i) ; (ii) ; (iii) .

  7 in total

1.  Hydrazones of 2-aryl-quinoline-4-carboxylic acid hydrazides: synthesis and preliminary evaluation as antimicrobial agents.

Authors:  Kamel A Metwally; Lobna M Abdel-Aziz; El-Sayed M Lashine; Mohamed I Husseiny; Rania H Badawy
Journal:  Bioorg Med Chem       Date:  2006-09-01       Impact factor: 3.641

2.  Synthesis, antibacterial and antifungal activity of some new thiazolylhydrazone derivatives containing 3-substituted cyclobutane ring.

Authors:  Alaaddin Cukurovali; Ibrahim Yilmaz; Seher Gur; Cavit Kazaz
Journal:  Eur J Med Chem       Date:  2005-12-27       Impact factor: 6.514

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  4-Meth-oxy-N'-(3-nitro-benzyl-idene)benzohydrazide.

Authors:  Jin-Long Hou; Ye Bi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-16

5.  N'-[(E)-Furan-2-yl-methyl-idene]pyridine-3-carbohydrazide.

Authors:  Jessy Emmanuel; M Sithambaresan; M R Prathapachandra Kurup
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-12

6.  N'-(4-Diethyl-amino-2-hy-droxy-benzyl-idene)-4-methyl-benzohydrazide.

Authors:  Xi-Hai Shen; Li-Juen Shao; Zhao-Fu Zhu; Li-Xue Zhu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-17

7.  N'-(5-Chloro-2-hy-droxy-benzyl-idene)-4-meth-oxy-benzohydrazide.

Authors:  Yao Tan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-17
  7 in total
  2 in total

1.  N'-[(E)-5-Bromo-2-hy-droxy-3-meth-oxy-benzyl-idene]benzohydrazide monohydrate.

Authors:  Jessy Emmanuel; M Sithambaresan; M R Prathapachandra Kurup
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-11-16

2.  4-{(E)-[2-(Pyridin-3-ylcarbon-yl)hydrazinyl-idene]meth-yl}phenyl acetate.

Authors:  Riya Datta; V Ramya; M Sithambaresan; M R Prathapachandra Kurup
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-09-18
  2 in total

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