Literature DB >> 24454222

N'-[(E)-5-Bromo-2-hy-droxy-3-meth-oxy-benzyl-idene]benzohydrazide monohydrate.

Jessy Emmanuel1, M Sithambaresan2, M R Prathapachandra Kurup3.   

Abstract

The title compound, C15H13BrN2O3·H2O, exists in an E conformation with respect to the azo-methane C=N double bond. The benzene and phenyl rings form dihedral angles of 0.46 (2) and 4.90 (3)°, respectively with the central C(=O)N2C unit. An intra-molecular O-H⋯N hydrogen bond occurs. In the crystal, some hydrazide mol-ecules are replaced by mol-ecules of the 6-bromo isomer. The Br atom from this admixture was refined to give a partial occupancy of 0.0443 (19). A supra-molecular network is built in the lattice by means of inter-molecular N-H⋯O and two O-H⋯O inter-actions together with non-classical C-H⋯O inter-actions involving the lattice water mol-ecule stacking the mol-ecules along the b-axis direction.

Entities:  

Year:  2013        PMID: 24454222      PMCID: PMC3885046          DOI: 10.1107/S1600536813030572

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological applications of benzohydrazones and derivatives, see: Sreeja et al. (2004 ▶); Rada & Leto (2008 ▶); Rakha et al. (1996 ▶); Takahama (1996 ▶). For the synthesis of related compounds, see: Emmanuel et al. (2011 ▶). For a related structure, see Reshma et al. (2012 ▶).

Experimental

Crystal data

C15H13BrN2O3·H2O M = 367.20 Orthorhombic, a = 4.7223 (5) Å b = 13.9357 (17) Å c = 23.028 (3) Å V = 1515.4 (3) Å3 Z = 4 Mo Kα radiation μ = 2.73 mm−1 T = 293 K 0.32 × 0.25 × 0.22 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.446, T max = 0.549 12759 measured reflections 2966 independent reflections 2189 reflections with I > 2σ(I) R int = 0.090

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.114 S = 0.89 2966 reflections 218 parameters 7 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.45 e Å−3 Δρmin = −0.29 e Å−3 Absolute structure: Flack (1983 ▶), 1203 Friedel pairs Absolute structure parameter: 0.016 (16) Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 2010 ▶); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) Global, I. DOI: 10.1107/S1600536813030572/hg5359sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813030572/hg5359Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813030572/hg5359Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H13BrN2O3·H2OF(000) = 744
Mr = 367.20Dx = 1.609 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 3233 reflections
a = 4.7223 (5) Åθ = 2.3–28.0°
b = 13.9357 (17) ŵ = 2.73 mm1
c = 23.028 (3) ÅT = 293 K
V = 1515.4 (3) Å3Block, pale brown
Z = 40.32 × 0.25 × 0.22 mm
Bruker Kappa APEXII CCD diffractometer2966 independent reflections
Radiation source: fine-focus sealed tube2189 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.090
Detector resolution: 8.33 pixels mm-1θmax = 26.0°, θmin = 2.9°
ω and φ scanh = −5→5
Absorption correction: multi-scan (SADABS; Bruker, 2004)k = −17→17
Tmin = 0.446, Tmax = 0.549l = −22→28
12759 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.114w = 1/[σ2(Fo2) + (0.P)2 + 1.2809P] where P = (Fo2 + 2Fc2)/3
S = 0.89(Δ/σ)max = 0.001
2966 reflectionsΔρmax = 0.45 e Å3
218 parametersΔρmin = −0.29 e Å3
7 restraintsAbsolute structure: Flack (1983), 1203 Friedel pairs
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: 0.016 (16)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Br11.56048 (13)0.50757 (4)0.94230 (3)0.0664 (2)0.956 (2)
Br1B1.181 (4)0.4776 (7)0.8289 (6)0.087 (7)0.044 (2)
O11.0006 (7)0.8426 (2)0.82729 (16)0.0610 (10)
H10.906 (14)0.8268 (14)0.798 (3)0.092*
O21.3713 (8)0.8739 (2)0.90679 (15)0.0598 (9)
O30.4122 (11)0.8432 (2)0.70096 (17)0.0800 (12)
N10.7166 (9)0.7183 (4)0.76351 (16)0.0552 (11)
N20.5260 (8)0.6904 (3)0.72170 (16)0.0536 (11)
H20.49970.63050.71460.064*
C21.1208 (10)0.7645 (3)0.85060 (19)0.0479 (11)
C31.3235 (10)0.7802 (3)0.8941 (2)0.0478 (11)
C41.4551 (10)0.7037 (3)0.92142 (19)0.0467 (11)
H41.58570.71400.95100.056*
C51.3871 (10)0.6112 (3)0.9036 (2)0.0496 (11)
H51.47440.55920.92140.060*0.044 (2)
C61.1964 (11)0.5953 (3)0.8607 (2)0.0527 (12)
H61.15700.53270.84920.063*0.956 (2)
C11.0590 (11)0.6710 (3)0.83351 (19)0.0479 (11)
C70.8523 (11)0.6512 (4)0.7890 (2)0.0555 (13)
H70.81680.58790.77870.067*
C80.3806 (11)0.7575 (3)0.6918 (2)0.0516 (12)
C90.1805 (10)0.7211 (3)0.64786 (18)0.0419 (10)
C100.1193 (10)0.6254 (3)0.6384 (2)0.0489 (12)
H100.20730.57870.66090.059*
C11−0.0706 (12)0.5983 (3)0.5959 (2)0.0587 (13)
H11−0.10950.53360.59010.070*
C12−0.2013 (12)0.6656 (4)0.5626 (2)0.0595 (13)
H12−0.32910.64700.53400.071*
C13−0.1445 (12)0.7607 (4)0.5713 (2)0.0603 (14)
H13−0.23300.80680.54840.072*
C140.0435 (11)0.7882 (3)0.6138 (2)0.0559 (12)
H140.07910.85310.61960.067*
C151.5878 (12)0.8956 (3)0.9469 (2)0.0616 (13)
H15A1.53790.87060.98440.092*
H15B1.61090.96390.94940.092*
H15C1.76210.86690.93430.092*
O1W0.4629 (10)0.9794 (2)0.78591 (18)0.0782 (11)
H1A0.473 (15)0.944 (4)0.7555 (18)0.117*
H1B0.346 (12)0.952 (5)0.809 (2)0.117*
U11U22U33U12U13U23
Br10.0768 (4)0.0492 (3)0.0733 (4)0.0101 (3)−0.0021 (3)0.0056 (3)
Br1B0.127 (13)0.058 (8)0.077 (10)−0.019 (8)0.028 (9)0.004 (7)
O10.059 (3)0.064 (2)0.060 (2)0.0015 (17)−0.0188 (19)0.0050 (17)
O20.064 (2)0.0475 (18)0.067 (2)0.0032 (17)−0.0247 (19)−0.0072 (16)
O30.108 (3)0.054 (2)0.078 (3)−0.020 (2)−0.012 (3)−0.0184 (19)
N10.048 (2)0.081 (3)0.037 (2)−0.018 (2)0.000 (2)−0.010 (2)
N20.051 (3)0.068 (2)0.042 (2)−0.012 (2)−0.003 (2)−0.009 (2)
C20.045 (3)0.059 (3)0.039 (2)−0.003 (2)−0.001 (2)−0.002 (2)
C30.049 (3)0.049 (3)0.045 (3)−0.003 (2)−0.005 (2)−0.005 (2)
C40.044 (2)0.055 (2)0.041 (2)0.002 (2)−0.001 (2)−0.005 (2)
C50.050 (3)0.052 (3)0.046 (3)0.000 (2)0.005 (2)−0.001 (2)
C60.056 (3)0.052 (3)0.050 (3)−0.006 (2)0.004 (3)−0.004 (2)
C10.044 (2)0.063 (3)0.036 (2)−0.008 (3)0.004 (2)−0.009 (2)
C70.049 (3)0.076 (3)0.042 (3)−0.015 (3)0.004 (2)−0.010 (3)
C80.054 (3)0.057 (3)0.044 (3)−0.007 (3)0.006 (2)−0.008 (2)
C90.043 (2)0.044 (2)0.039 (2)−0.002 (2)0.007 (2)−0.007 (2)
C100.053 (3)0.042 (2)0.052 (3)0.001 (2)−0.010 (2)−0.002 (2)
C110.062 (3)0.047 (3)0.067 (3)0.003 (3)−0.013 (3)−0.015 (2)
C120.057 (3)0.069 (3)0.052 (3)0.006 (3)−0.009 (3)−0.005 (3)
C130.061 (3)0.063 (3)0.057 (3)0.008 (3)−0.006 (3)0.011 (3)
C140.063 (3)0.043 (2)0.061 (3)−0.002 (3)0.005 (3)0.000 (2)
C150.061 (3)0.059 (3)0.065 (3)−0.002 (3)−0.017 (3)−0.011 (3)
O1W0.111 (3)0.053 (2)0.071 (2)−0.012 (2)−0.018 (2)−0.0054 (18)
Br1—C51.885 (5)C1—C71.441 (7)
Br1B—C61.798 (8)C7—H70.9300
O1—C21.339 (6)C8—C91.475 (6)
O1—H10.8311C9—C141.382 (6)
O2—C31.357 (5)C9—C101.382 (6)
O2—C151.411 (6)C10—C111.379 (7)
O3—C81.221 (5)C10—H100.9300
N1—C71.277 (7)C11—C121.360 (7)
N1—N21.374 (5)C11—H110.9300
N2—C81.349 (6)C12—C131.366 (7)
N2—H20.8600C12—H120.9300
C2—C11.392 (6)C13—C141.376 (7)
C2—C31.403 (6)C13—H130.9300
C3—C41.385 (6)C14—H140.9300
C4—C51.391 (6)C15—H15A0.9600
C4—H40.9300C15—H15B0.9600
C5—C61.355 (7)C15—H15C0.9600
C5—H50.9300O1W—H1A0.86 (2)
C6—C11.387 (6)O1W—H1B0.86 (2)
C6—H60.9300
C2—O1—H1109.5C1—C7—H7119.1
C3—O2—C15117.9 (4)O3—C8—N2121.9 (5)
C7—N1—N2116.3 (5)O3—C8—C9122.2 (5)
C8—N2—N1119.6 (4)N2—C8—C9116.0 (4)
C8—N2—H2120.2C14—C9—C10117.7 (4)
N1—N2—H2120.2C14—C9—C8117.2 (4)
O1—C2—C1123.9 (4)C10—C9—C8125.1 (4)
O1—C2—C3116.7 (4)C11—C10—C9120.8 (4)
C1—C2—C3119.4 (4)C11—C10—H10119.6
O2—C3—C4124.6 (4)C9—C10—H10119.6
O2—C3—C2114.6 (4)C12—C11—C10120.4 (4)
C4—C3—C2120.7 (4)C12—C11—H11119.8
C3—C4—C5118.4 (4)C10—C11—H11119.8
C3—C4—H4120.8C11—C12—C13119.8 (5)
C5—C4—H4120.8C11—C12—H12120.1
C6—C5—C4121.4 (4)C13—C12—H12120.1
C6—C5—Br1120.6 (4)C12—C13—C14120.1 (5)
C4—C5—Br1118.0 (4)C12—C13—H13120.0
C6—C5—H5119.3C14—C13—H13120.0
C4—C5—H5119.3C9—C14—C13121.2 (4)
C5—C6—C1121.0 (4)C9—C14—H14119.4
C5—C6—Br1B118.3 (7)C13—C14—H14119.4
C1—C6—Br1B119.4 (7)O2—C15—H15A109.5
C5—C6—H6119.5O2—C15—H15B109.5
C1—C6—H6119.5H15A—C15—H15B109.5
C6—C1—C2119.1 (4)O2—C15—H15C109.5
C6—C1—C7119.4 (5)H15A—C15—H15C109.5
C2—C1—C7121.5 (5)H15B—C15—H15C109.5
N1—C7—C1121.8 (5)H1A—O1W—H1B106 (4)
N1—C7—H7119.1
C7—N1—N2—C8−178.2 (4)C3—C2—C1—C61.1 (7)
C15—O2—C3—C45.9 (7)O1—C2—C1—C7−1.1 (7)
C15—O2—C3—C2−175.2 (4)C3—C2—C1—C7180.0 (4)
O1—C2—C3—O2−0.1 (6)N2—N1—C7—C1179.7 (4)
C1—C2—C3—O2178.9 (4)C6—C1—C7—N1178.7 (5)
O1—C2—C3—C4178.8 (4)C2—C1—C7—N1−0.2 (7)
C1—C2—C3—C4−2.2 (7)N1—N2—C8—O3−0.3 (7)
O2—C3—C4—C5−179.5 (5)N1—N2—C8—C9−179.9 (4)
C2—C3—C4—C51.8 (7)O3—C8—C9—C144.8 (7)
C3—C4—C5—C6−0.2 (7)N2—C8—C9—C14−175.5 (4)
C3—C4—C5—Br1−178.5 (4)O3—C8—C9—C10−175.0 (5)
C4—C5—C6—C1−0.9 (7)N2—C8—C9—C104.7 (7)
Br1—C5—C6—C1177.3 (4)C14—C9—C10—C110.5 (7)
C4—C5—C6—Br1B165.9 (7)C8—C9—C10—C11−179.7 (5)
Br1—C5—C6—Br1B−15.9 (8)C9—C10—C11—C120.0 (8)
C5—C6—C1—C20.5 (7)C10—C11—C12—C13−0.1 (9)
Br1B—C6—C1—C2−166.1 (7)C11—C12—C13—C14−0.3 (9)
C5—C6—C1—C7−178.5 (4)C10—C9—C14—C13−0.8 (7)
Br1B—C6—C1—C714.9 (9)C8—C9—C14—C13179.4 (5)
O1—C2—C1—C6−180.0 (4)C12—C13—C14—C90.8 (8)
D—H···AD—HH···AD···AD—H···A
N2—H2···O1Wi0.862.112.946 (5)163
O1—H1···N10.831.932.637 (5)142
O1W—H1B···O2ii0.86 (2)2.50 (5)3.178 (5)136 (6)
O1W—H1B···O1ii0.86 (2)2.27 (4)3.051 (5)151 (6)
O1W—H1A···O30.86 (2)1.91 (3)2.736 (5)163 (6)
C7—H7···O1Wi0.932.503.305 (6)145
C10—H10···O1Wi0.932.423.329 (6)166
C11—H11···O2i0.932.553.435 (5)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2⋯O1W i 0.862.112.946 (5)163
O1—H1⋯N10.831.932.637 (5)142
O1W—H1B⋯O2ii 0.86 (2)2.50 (5)3.178 (5)136 (6)
O1W—H1B⋯O1ii 0.86 (2)2.27 (4)3.051 (5)151 (6)
O1W—H1A⋯O30.86 (2)1.91 (3)2.736 (5)163 (6)
C7—H7⋯O1W i 0.932.503.305 (6)145
C10—H10⋯O1W i 0.932.423.329 (6)166
C11—H11⋯O2i 0.932.553.435 (5)160

Symmetry codes: (i) ; (ii) .

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