Literature DB >> 23115338

Evolutionary layering and the limits to cellular perfection.

Michael Lynch1.   

Abstract

Although observations from biochemistry and cell biology seemingly illustrate hundreds of examples of exquisite molecular adaptations, the fact that experimental manipulation can often result in improvements in cellular infrastructure raises the question as to what ultimately limits the level of molecular perfection achievable by natural selection. Here, it is argued that random genetic drift can impose a strong barrier to the advancement of molecular refinements by adaptive processes. Moreover, although substantial improvements in fitness may sometimes be accomplished via the emergence of novel cellular features that improve on previously established mechanisms, such advances are expected to often be transient, with overall fitness eventually returning to the level before incorporation of the genetic novelty. As a consequence of such changes, increased molecular/cellular complexity can arise by Darwinian processes, while yielding no long-term increase in adaptation and imposing increased energetic and mutational costs.

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Year:  2012        PMID: 23115338      PMCID: PMC3503168          DOI: 10.1073/pnas.1216130109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  28 in total

1.  On the possibility of constructive neutral evolution.

Authors:  A Stoltzfus
Journal:  J Mol Evol       Date:  1999-08       Impact factor: 2.395

2.  On the probability of fixation of mutant genes in a population.

Authors:  M KIMURA
Journal:  Genetics       Date:  1962-06       Impact factor: 4.562

3.  The frailty of adaptive hypotheses for the origins of organismal complexity.

Authors:  Michael Lynch
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-09       Impact factor: 11.205

4.  Selection for chaperone-like mediated genetic robustness at low mutation rate: impact of drift, epistasis and complexity.

Authors:  Pierre-Alexis Gros; Olivier Tenaillon
Journal:  Genetics       Date:  2009-03-23       Impact factor: 4.562

5.  Compensating for our load of mutations: freezing the meltdown of small populations.

Authors:  A Poon; S P Otto
Journal:  Evolution       Date:  2000-10       Impact factor: 3.694

6.  Limits of adaptation: the evolution of selective neutrality.

Authors:  D L Hartl; D E Dykhuizen; A M Dean
Journal:  Genetics       Date:  1985-11       Impact factor: 4.562

7.  The spandrels of San Marco and the Panglossian paradigm: a critique of the adaptationist programme.

Authors:  S J Gould; R C Lewontin
Journal:  Proc R Soc Lond B Biol Sci       Date:  1979-09-21

8.  Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution.

Authors:  D Allan Drummond; Claus O Wilke
Journal:  Cell       Date:  2008-07-25       Impact factor: 41.582

9.  The rate at which asexual populations cross fitness valleys.

Authors:  Daniel B Weissman; Michael M Desai; Daniel S Fisher; Marcus W Feldman
Journal:  Theor Popul Biol       Date:  2009-03-13       Impact factor: 1.570

10.  The lower bound to the evolution of mutation rates.

Authors:  Michael Lynch
Journal:  Genome Biol Evol       Date:  2011-08-04       Impact factor: 3.416

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  19 in total

1.  Evolutionary diversification of the multimeric states of proteins.

Authors:  Michael Lynch
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-08       Impact factor: 11.205

2.  Evolutionary cell biology: two origins, one objective.

Authors:  Michael Lynch; Mark C Field; Holly V Goodson; Harmit S Malik; José B Pereira-Leal; David S Roos; Aaron P Turkewitz; Shelley Sazer
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-17       Impact factor: 11.205

3.  Drift Barriers to Quality Control When Genes Are Expressed at Different Levels.

Authors:  Kun Xiong; Jay P McEntee; David J Porfirio; Joanna Masel
Journal:  Genetics       Date:  2016-11-11       Impact factor: 4.562

4.  Background Mutational Features of the Radiation-Resistant Bacterium Deinococcus radiodurans.

Authors:  Hongan Long; Sibel Kucukyildirim; Way Sung; Emily Williams; Heewook Lee; Matthew Ackerman; Thomas G Doak; Haixu Tang; Michael Lynch
Journal:  Mol Biol Evol       Date:  2015-05-14       Impact factor: 16.240

5.  DNA: Celebrate the unknowns.

Authors:  Philip Ball
Journal:  Nature       Date:  2013-04-25       Impact factor: 49.962

6.  Mutations in adenine-binding pockets enhance catalytic properties of NAD(P)H-dependent enzymes.

Authors:  J K B Cahn; A Baumschlager; S Brinkmann-Chen; F H Arnold
Journal:  Protein Eng Des Sel       Date:  2015-10-27       Impact factor: 1.650

7.  Transcriptional errors and the drift barrier.

Authors:  David M McCandlish; Joshua B Plotkin
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-10       Impact factor: 11.205

8.  Informational limits of biological organisms.

Authors:  Jussi Taipale
Journal:  EMBO J       Date:  2018-04-18       Impact factor: 11.598

Review 9.  A Theoretical Framework for Evolutionary Cell Biology.

Authors:  Michael Lynch; Bogi Trickovic
Journal:  J Mol Biol       Date:  2020-02-19       Impact factor: 5.469

10.  Specificity of the DNA Mismatch Repair System (MMR) and Mutagenesis Bias in Bacteria.

Authors:  Hongan Long; Samuel F Miller; Emily Williams; Michael Lynch
Journal:  Mol Biol Evol       Date:  2018-10-01       Impact factor: 16.240

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