| Literature DB >> 23110197 |
Therese Pluess1, Vojtěch Jarošík, Petr Pyšek, Ray Cannon, Jan Pergl, Annemarie Breukers, Sven Bacher.
Abstract
Although issues related to the management of invasive alien species are receiving increasing attention, little is known about which factors affect the likelihood of success of management measures. We applied two data mining techniques, classification trees and boosted trees, to identify factors that relate to the success of management campaigns aimed at eradicating invasive alien invertebrates, plants and plant pathogens. We assembled a dataset of 173 different eradication campaigns against 94 species worldwide, about a half of which (50.9%) were successful. Eradications in man-made habitats, greenhouses in particular, were more likely to succeed than those in (semi-)natural habitats. In man-made habitats the probability of success was generally high in Australasia, while in Europe and the Americas it was higher for local infestations that are easier to deal with, and for international campaigns that are likely to profit from cross-border cooperation. In (semi-) natural habitats, eradication campaigns were more likely to succeed for plants introduced as an ornamental and escaped from cultivation prior to invasion. Averaging out all other factors in boosted trees, pathogens, bacteria and viruses were most, and fungi the least likely to be eradicated; for plants and invertebrates the probability was intermediate. Our analysis indicates that initiating the campaign before the extent of infestation reaches the critical threshold, starting to eradicate within the first four years since the problem has been noticed, paying special attention to species introduced by the cultivation pathway, and applying sanitary measures can substantially increase the probability of eradication success. Our investigations also revealed that information on socioeconomic factors, which are often considered to be crucial for eradication success, is rarely available, and thus their relative importance cannot be evaluated. Future campaigns should carefully document socioeconomic factors to enable tests of their importance.Entities:
Mesh:
Year: 2012 PMID: 23110197 PMCID: PMC3482215 DOI: 10.1371/journal.pone.0048157
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Description of 29 potential success factors of 173 eradications against invertebrate plant pests, plant pathogens (viruses/viroids, bacteria and fungi) and weeds, used in data mining analyses.
| Factor | Description |
| Outcome |
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| Weight | 1/(number of campaigns for this species); number between 1 and 0.01667 |
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| Kingdom | Taxonomic kingdom: Virus-like organisms, Bacteria, Fungi, Animalia (represented by invertebrates), Plantae |
| Identification method | Methods needed for the identification of the organism: |
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| Agricultural problem |
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| Forestry problem |
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| Man-made habitat | Yes: campaign in EUNIS habitats |
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| Insularity | eradication on an |
| eradication on the | |
| Accessibility |
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| Indoor or outdoor habitat |
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| World region |
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| Spatial extent of outbreak |
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| Area infested [ha] | Size of infested area in hectares, as reported. Often, the treated area was given, as exact extension was not known at onset of measures. Treated area is taken, if no other information was available. If area increases over time, the largest size was taken. |
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| Proportion infested [%] | Proportion of suitable habitat infested at the onset of the measures |
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| Pest distribution |
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| Biological control |
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| Chemical control |
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| Cultural control |
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| Physical control |
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| Sanitary control |
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| Measures available |
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| Knowledge and preparedness |
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| Official detection |
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| Reaction time | The time elapsing between the arrival (or detection) of the organism and the start of the eradication campaign, counted in months |
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| Coordination | Self-declared or assumed level of coordination between involved parties |
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| Rate of introduction |
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| Pathway |
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| Pathway: Corridor |
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| Pathway: Escaped |
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| Pathway: Stowaway |
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| Pathway: Unaided |
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NA = information not available.
European Nature Information System habitat classification http://eunis.eea.europa.eu/habitats.jsp.
pathways were defined according to [44].
Figure 1Optimal classification tree for factors relating to success and failure of 173 eradication campaigns against invertebrate plant pests, plant pathogens (viruses/viroids, bacteria and fungi) and weeds in a model without any predetermined structure.
Splitting nodes (polygonal tables with splitting variable name) and terminal nodes (with a split criterion above each) show a table with columns for the outcome (success/failure) and % of weighted cases for each outcome, total number of unweighted cases (N), and graphical representation of the percentage of success (grey) and failure (black) weighted cases (horizontal bar). Vertical depth of each node is proportional to its improvement value that corresponds to explained variance at the node. Overall misclassification rate of the optimal tree is 15.8% compared to 50% for the null model, with 16.7% misclassified success and 14.8% failure cases. Sensitivity (true positive rate, defined as the ability of the model to predict that a case is eradicated when it actually is) is 83.3 and specificity (true negative rate, defined as the ability of the model to predict that a case is not eradicated when it is not) 85.2% for learning samples, i.e. the samples not used to build the models for assessment of cross-validation errors, and 77.1 and 69.0%, respectively, for cross-validated samples, i.e. the best estimates that would occur if the models were to be applied to new data, assuming that the new data were drawn from the same distribution as the learning data.
Figure 2Partial dependence plots based on the optimal boosted tree for (a) taxonomic Kingdoms, (b) biogeographic regions, (c) the reaction time between the arrival/detection of the organism and the start of the eradication campaign, (d) the spatial extent of the pest outbreak, (e) the level of biological knowledge and preparedness, and (f) insularity.
The plots show probabilities of success of an eradication campaign for these predictors as net effects, i.e. averaging out the effects of all the other predictors included in the optimal boosted tree. The optimal boosted tree has overall misclassification rate 5.2% with 3.0% misclassified success and 8.0% failure cases. Sensitivity and specificity are respectively 97.0 and 92.0% for learning, and 82.2 and 68.1% for cross-validated samples. See Table 1 for detail description of the predictors and Fig. 1 for detail explanation of misclassification rates, sensitivity and specificity.
Figure 3Optimal classification tree with event-specific factors placed at the top of the tree.
Otherwise as in Fig. 1. Overall misclassification rate of the optimal tree is 18.0% with 15.3% misclassified success and 23.4% failure cases. Sensitivity and specificity are respectively 84.7 and 76.6% for learning, and 66.7 and 64.9% for cross-validated samples. Detail explanation of misclassification rates, sensitivity and specificity is in Fig. 1.