Literature DB >> 23104145

Understanding protein aggregation from the view of monomer dynamics.

Lisa J Lapidus1.   

Abstract

Much work in recent years has been devoted to understanding the complex process of protein aggregation. This review looks at the earliest stages of aggregation, long before the formation of fibrils that are the hallmark of many aggregation-based diseases, and proposes that the first steps are controlled by the reconfiguration dynamics of the monomer. When reconfiguration is much faster or much slower than bimolecular diffusion, then aggregation is slow, but when they are similar, aggregation is fast. The experimental evidence for this model is reviewed and the prospects for small molecule aggregation inhibitors to prevent disease are discussed.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 23104145      PMCID: PMC4834696          DOI: 10.1039/c2mb25334h

Source DB:  PubMed          Journal:  Mol Biosyst        ISSN: 1742-2051


  71 in total

1.  Dynamics of intramolecular contact formation in polypeptides: distance dependence of quenching rates in a room-temperature glass.

Authors:  L J Lapidus; W A Eaton; J Hofrichter
Journal:  Phys Rev Lett       Date:  2001-11-30       Impact factor: 9.161

2.  Impact of chemical heterogeneity on protein self-assembly in water.

Authors:  Song-Ho Chong; Sihyun Ham
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-26       Impact factor: 11.205

3.  Aggregation of α-synuclein is kinetically controlled by intramolecular diffusion.

Authors:  Basir Ahmad; Yujie Chen; Lisa J Lapidus
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-27       Impact factor: 11.205

Review 4.  Prediction of the aggregation propensity of proteins from the primary sequence: aggregation properties of proteomes.

Authors:  Virginia Castillo; Ricardo Graña-Montes; Raimon Sabate; Salvador Ventura
Journal:  Biotechnol J       Date:  2011-04-29       Impact factor: 4.677

5.  Aggregation kinetics of interrupted polyglutamine peptides.

Authors:  Robert H Walters; Regina M Murphy
Journal:  J Mol Biol       Date:  2011-07-29       Impact factor: 5.469

6.  Curcumin prevents aggregation in α-synuclein by increasing reconfiguration rate.

Authors:  Basir Ahmad; Lisa J Lapidus
Journal:  J Biol Chem       Date:  2012-01-20       Impact factor: 5.157

7.  Structural and dynamics characteristics of acylphosphatase from Sulfolobus solfataricus in the monomeric state and in the initial native-like aggregates.

Authors:  Katiuscia Pagano; Francesco Bemporad; Federico Fogolari; Gennaro Esposito; Paolo Viglino; Fabrizio Chiti; Alessandra Corazza
Journal:  J Biol Chem       Date:  2010-03-11       Impact factor: 5.157

Review 8.  A beta oligomers - a decade of discovery.

Authors:  Dominic M Walsh; Dennis J Selkoe
Journal:  J Neurochem       Date:  2007-02-05       Impact factor: 5.372

9.  Dynamic similarity of the unfolded states of proteins L and G.

Authors:  Vijay R Singh; Michaela Kopka; Yujie Chen; William J Wedemeyer; Lisa J Lapidus
Journal:  Biochemistry       Date:  2007-08-08       Impact factor: 3.162

10.  α-Synuclein occurs physiologically as a helically folded tetramer that resists aggregation.

Authors:  Tim Bartels; Joanna G Choi; Dennis J Selkoe
Journal:  Nature       Date:  2011-08-14       Impact factor: 49.962

View more
  17 in total

1.  Intramolecular diffusion controls aggregation of the PAPf39 peptide.

Authors:  Kinshuk R Srivastava; Kinsley C French; Franco O Tzul; George I Makhatadze; Lisa J Lapidus
Journal:  Biophys Chem       Date:  2016-06-29       Impact factor: 2.352

2.  Nortriptyline inhibits aggregation and neurotoxicity of alpha-synuclein by enhancing reconfiguration of the monomeric form.

Authors:  Timothy J Collier; Kinshuk R Srivastava; Craig Justman; Tom Grammatopoulous; Birgit Hutter-Paier; Manuela Prokesch; Daniel Havas; Jean-Christophe Rochet; Fang Liu; Kevin Jock; Patrícia de Oliveira; Georgia L Stirtz; Ulf Dettmer; Caryl E Sortwell; Mel B Feany; Peter Lansbury; Lisa Lapidus; Katrina L Paumier
Journal:  Neurobiol Dis       Date:  2017-07-12       Impact factor: 5.996

3.  A quantitative measure for protein conformational heterogeneity.

Authors:  Nicholas Lyle; Rahul K Das; Rohit V Pappu
Journal:  J Chem Phys       Date:  2013-09-28       Impact factor: 3.488

4.  Direct Detection of α-Synuclein Dimerization Dynamics: Single-Molecule Fluorescence Analysis.

Authors:  Zhengjian Lv; Alexey V Krasnoslobodtsev; Yuliang Zhang; Daniel Ysselstein; Jean-Christophe Rochet; Scott C Blanchard; Yuri L Lyubchenko
Journal:  Biophys J       Date:  2015-04-21       Impact factor: 4.033

5.  Equilibrium Ensembles for Insulin Folding from Bias-Exchange Metadynamics.

Authors:  Richa Singh; Rohit Bansal; Anurag Singh Rathore; Gaurav Goel
Journal:  Biophys J       Date:  2017-04-25       Impact factor: 4.033

6.  A coarse-grained model for polyglutamine aggregation modulated by amphipathic flanking sequences.

Authors:  Kiersten M Ruff; Siddique J Khan; Rohit V Pappu
Journal:  Biophys J       Date:  2014-09-02       Impact factor: 4.033

Review 7.  Structure and mechanism of action of tau aggregation inhibitors.

Authors:  Katryna Cisek; Grace L Cooper; Carol J Huseby; Jeff Kuret
Journal:  Curr Alzheimer Res       Date:  2014       Impact factor: 3.498

8.  Prion protein dynamics before aggregation.

Authors:  Kinshuk Raj Srivastava; Lisa J Lapidus
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-20       Impact factor: 11.205

9.  Effects of Mutations on the Reconfiguration Rate of α-Synuclein.

Authors:  Srabasti Acharya; Shreya Saha; Basir Ahmad; Lisa J Lapidus
Journal:  J Phys Chem B       Date:  2015-12-04       Impact factor: 2.991

10.  Monomer Dynamics of Alzheimer Peptides and Kinetic Control of Early Aggregation in Alzheimer's Disease.

Authors:  Srabasti Acharya; Kinshuk R Srivastava; Sureshbabu Nagarajan; Lisa J Lapidus
Journal:  Chemphyschem       Date:  2016-09-15       Impact factor: 3.102

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.