Literature DB >> 26572968

Effects of Mutations on the Reconfiguration Rate of α-Synuclein.

Srabasti Acharya1, Shreya Saha1, Basir Ahmad1, Lisa J Lapidus1.   

Abstract

It is still poorly understood why α-synuclein, the intrinsically disordered protein involved in Parkinson's and other neurodegenerative diseases, is so prone to aggregation. Recent work has shown a correlation between the aggregation rate and the rate of diffusional reconfiguration by varying temperature and pH. Here we examine the effects of several point mutations in the sequence on the conformational ensemble and reconfiguration rate. We find that at lower temperatures the PD causing aggregation enhancing mutations slow down and aggregation reducing mutations drastically speed up intramolecular diffusion, as compared to the wild type sequence. However, at higher temperatures, one of three familial mutations that enhance aggregation slows intramolecular diffusion while non-natural mutations that inhibit aggregation speed up intramolecular diffusion. These results support the hypothesis that the first step of aggregation is kinetically controlled by reconfiguration in which the protein chain cannot reconfigure rapidly enough to escape oligomerization. Finally we provide physical and chemical insights into why small point mutations cause these dramatic changes in the conformational ensemble and dynamics.

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Year:  2015        PMID: 26572968      PMCID: PMC4836914          DOI: 10.1021/acs.jpcb.5b10136

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  48 in total

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2.  Direct Detection of α-Synuclein Dimerization Dynamics: Single-Molecule Fluorescence Analysis.

Authors:  Zhengjian Lv; Alexey V Krasnoslobodtsev; Yuliang Zhang; Daniel Ysselstein; Jean-Christophe Rochet; Scott C Blanchard; Yuri L Lyubchenko
Journal:  Biophys J       Date:  2015-04-21       Impact factor: 4.033

3.  Polymer scaling laws of unfolded and intrinsically disordered proteins quantified with single-molecule spectroscopy.

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Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-14       Impact factor: 11.205

4.  Curcumin prevents aggregation in α-synuclein by increasing reconfiguration rate.

Authors:  Basir Ahmad; Lisa J Lapidus
Journal:  J Biol Chem       Date:  2012-01-20       Impact factor: 5.157

5.  Molecular basis for preventing α-synuclein aggregation by a molecular tweezer.

Authors:  Srabasti Acharya; Brian M Safaie; Piriya Wongkongkathep; Magdalena I Ivanova; Aida Attar; Frank-Gerrit Klärner; Thomas Schrader; Joseph A Loo; Gal Bitan; Lisa J Lapidus
Journal:  J Biol Chem       Date:  2014-02-24       Impact factor: 5.157

6.  Temperature-dependent solvation modulates the dimensions of disordered proteins.

Authors:  René Wuttke; Hagen Hofmann; Daniel Nettels; Madeleine B Borgia; Jeetain Mittal; Robert B Best; Benjamin Schuler
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-21       Impact factor: 11.205

7.  Slow unfolded-state structuring in Acyl-CoA binding protein folding revealed by simulation and experiment.

Authors:  Vincent A Voelz; Marcus Jäger; Shuhuai Yao; Yujie Chen; Li Zhu; Steven A Waldauer; Gregory R Bowman; Mark Friedrichs; Olgica Bakajin; Lisa J Lapidus; Shimon Weiss; Vijay S Pande
Journal:  J Am Chem Soc       Date:  2012-07-19       Impact factor: 15.419

8.  Structures and free energy landscapes of the wild-type and A30P mutant-type α-synuclein proteins with dynamics.

Authors:  Olivia Wise-Scira; Ahmet Kemal Aloglu; Aquila Dunn; Isin Tuna Sakallioglu; Orkid Coskuner
Journal:  ACS Chem Neurosci       Date:  2013-01-30       Impact factor: 4.418

9.  Experiments and simulations show how long-range contacts can form in expanded unfolded proteins with negligible secondary structure.

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Review 10.  Understanding protein aggregation from the view of monomer dynamics.

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  9 in total

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2.  Nortriptyline inhibits aggregation and neurotoxicity of alpha-synuclein by enhancing reconfiguration of the monomeric form.

Authors:  Timothy J Collier; Kinshuk R Srivastava; Craig Justman; Tom Grammatopoulous; Birgit Hutter-Paier; Manuela Prokesch; Daniel Havas; Jean-Christophe Rochet; Fang Liu; Kevin Jock; Patrícia de Oliveira; Georgia L Stirtz; Ulf Dettmer; Caryl E Sortwell; Mel B Feany; Peter Lansbury; Lisa Lapidus; Katrina L Paumier
Journal:  Neurobiol Dis       Date:  2017-07-12       Impact factor: 5.996

3.  Direct Observation of the Intrinsic Backbone Torsional Mobility of Disordered Proteins.

Authors:  Neha Jain; Dominic Narang; Karishma Bhasne; Vijit Dalal; Shruti Arya; Mily Bhattacharya; Samrat Mukhopadhyay
Journal:  Biophys J       Date:  2016-08-23       Impact factor: 4.033

4.  Prion protein dynamics before aggregation.

Authors:  Kinshuk Raj Srivastava; Lisa J Lapidus
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-20       Impact factor: 11.205

5.  Characterization of Amyloidogenic Peptide Aggregability in Helical Subspace.

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Journal:  Methods Mol Biol       Date:  2022

6.  Predicting and Simulating Mutational Effects on Protein Folding Kinetics.

Authors:  Athi N Naganathan
Journal:  Methods Mol Biol       Date:  2022

7.  Intramolecular Diffusion in α-Synuclein: It Depends on How You Measure It.

Authors:  Jaie Woodard; Kinshuk R Srivastava; Gil Rahamim; Asaf Grupi; Steven Hogan; David J Witalka; Grzegorz Nawrocki; Elisha Haas; Michael Feig; Lisa J Lapidus
Journal:  Biophys J       Date:  2018-08-27       Impact factor: 4.033

Review 8.  Looking at the recent advances in understanding α-synuclein and its aggregation through the proteoform prism.

Authors:  Vladimir N Uversky
Journal:  F1000Res       Date:  2017-04-20

Review 9.  Living in Promiscuity: The Multiple Partners of Alpha-Synuclein at the Synapse in Physiology and Pathology.

Authors:  Francesca Longhena; Gaia Faustini; Maria Grazia Spillantini; Arianna Bellucci
Journal:  Int J Mol Sci       Date:  2019-01-02       Impact factor: 5.923

  9 in total

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