Literature DB >> 27490673

Monomer Dynamics of Alzheimer Peptides and Kinetic Control of Early Aggregation in Alzheimer's Disease.

Srabasti Acharya1, Kinshuk R Srivastava1, Sureshbabu Nagarajan1, Lisa J Lapidus1,2.   

Abstract

The rate of reconfiguration-or intramolecular diffusion-of monomeric Alzheimer (Aβ) peptides is measured and, under conditions that aggregation is more likely, peptide diffusion slows down significantly, which allows bimolecular associations to be initiated. By using the method of Trp-Cys contact quenching, the rate of reconfiguration is observed to be about five times faster for Aβ40 , which aggregates slowly, than that for Aβ42 , which aggregates quickly. Furthermore, the rate of reconfiguration for Aβ42 speeds up at higher pH, which slows aggregation, and in the presence of the aggregation inhibitor curcumin. The measured reconfiguration rates are able to predict the early aggregation behavior of the Aβ peptide and provide a kinetic basis for why Aβ42 is more prone to aggregation than Aβ40 , despite a difference of only two amino acids.
© 2016 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  Alzheimer's disease; aggregation; inhibitors; kinetics; peptides

Mesh:

Substances:

Year:  2016        PMID: 27490673      PMCID: PMC5806154          DOI: 10.1002/cphc.201600706

Source DB:  PubMed          Journal:  Chemphyschem        ISSN: 1439-4235            Impact factor:   3.102


  47 in total

1.  Dynamics of intramolecular contact formation in polypeptides: distance dependence of quenching rates in a room-temperature glass.

Authors:  L J Lapidus; W A Eaton; J Hofrichter
Journal:  Phys Rev Lett       Date:  2001-11-30       Impact factor: 9.161

2.  Characterizing amyloid-beta protein misfolding from molecular dynamics simulations with explicit water.

Authors:  Chewook Lee; Sihyun Ham
Journal:  J Comput Chem       Date:  2010-08-23       Impact factor: 3.376

3.  Aggregation of α-synuclein is kinetically controlled by intramolecular diffusion.

Authors:  Basir Ahmad; Yujie Chen; Lisa J Lapidus
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-27       Impact factor: 11.205

4.  Kinetics of intramolecular contact formation in a denatured protein.

Authors:  Marco Buscaglia; Benjamin Schuler; Lisa J Lapidus; William A Eaton; James Hofrichter
Journal:  J Mol Biol       Date:  2003-09-05       Impact factor: 5.469

5.  Curcumin prevents aggregation in α-synuclein by increasing reconfiguration rate.

Authors:  Basir Ahmad; Lisa J Lapidus
Journal:  J Biol Chem       Date:  2012-01-20       Impact factor: 5.157

6.  Early amyloid β-protein aggregation precedes conformational change.

Authors:  Bogdan Barz; Olujide O Olubiyi; Birgit Strodel
Journal:  Chem Commun (Camb)       Date:  2014-01-27       Impact factor: 6.222

Review 7.  The amyloid hypothesis of Alzheimer's disease: progress and problems on the road to therapeutics.

Authors:  John Hardy; Dennis J Selkoe
Journal:  Science       Date:  2002-07-19       Impact factor: 47.728

8.  Solution structures of micelle-bound amyloid beta-(1-40) and beta-(1-42) peptides of Alzheimer's disease.

Authors:  H Shao; S Jao; K Ma; M G Zagorski
Journal:  J Mol Biol       Date:  1999-01-15       Impact factor: 5.469

9.  Aβ monomers transiently sample oligomer and fibril-like configurations: ensemble characterization using a combined MD/NMR approach.

Authors:  David J Rosenman; Christopher R Connors; Wen Chen; Chunyu Wang; Angel E García
Journal:  J Mol Biol       Date:  2013-06-25       Impact factor: 5.469

10.  Dynamic similarity of the unfolded states of proteins L and G.

Authors:  Vijay R Singh; Michaela Kopka; Yujie Chen; William J Wedemeyer; Lisa J Lapidus
Journal:  Biochemistry       Date:  2007-08-08       Impact factor: 3.162

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  10 in total

1.  Intramolecular diffusion controls aggregation of the PAPf39 peptide.

Authors:  Kinshuk R Srivastava; Kinsley C French; Franco O Tzul; George I Makhatadze; Lisa J Lapidus
Journal:  Biophys Chem       Date:  2016-06-29       Impact factor: 2.352

2.  Highly Disordered Amyloid-β Monomer Probed by Single-Molecule FRET and MD Simulation.

Authors:  Fanjie Meng; Mathias M J Bellaiche; Jae-Yeol Kim; Gül H Zerze; Robert B Best; Hoi Sung Chung
Journal:  Biophys J       Date:  2018-02-27       Impact factor: 4.033

3.  Characterization of Amyloidogenic Peptide Aggregability in Helical Subspace.

Authors:  Shayon Bhattacharya; Liang Xu; Damien Thompson
Journal:  Methods Mol Biol       Date:  2022

4.  Fluorescent Probe DCVJ Shows High Sensitivity for Characterization of Amyloid β-Peptide Early in the Lag Phase.

Authors:  Sureshbabu Nagarajan; Lisa J Lapidus
Journal:  Chembiochem       Date:  2017-10-12       Impact factor: 3.164

Review 5.  The Early Events That Initiate β-Amyloid Aggregation in Alzheimer's Disease.

Authors:  Xingyu Zhang; Zhihui Fu; Lanxia Meng; Mingyang He; Zhentao Zhang
Journal:  Front Aging Neurosci       Date:  2018-11-13       Impact factor: 5.750

Review 6.  From Brain to Heart: Possible Role of Amyloid-β in Ischemic Heart Disease and Ischemia-Reperfusion Injury.

Authors:  Giulia Gagno; Federico Ferro; Alessandra Lucia Fluca; Milijana Janjusevic; Maddalena Rossi; Gianfranco Sinagra; Antonio Paolo Beltrami; Rita Moretti; Aneta Aleksova
Journal:  Int J Mol Sci       Date:  2020-12-17       Impact factor: 5.923

7.  Thermodynamics and kinetics of the amyloid-β peptide revealed by Markov state models based on MD data in agreement with experiment.

Authors:  Arghadwip Paul; Suman Samantray; Marco Anteghini; Mohammed Khaled; Birgit Strodel
Journal:  Chem Sci       Date:  2021-04-15       Impact factor: 9.825

Review 8.  Traumatic Brain Injury and Alzheimer's Disease: The Cerebrovascular Link.

Authors:  Jaime Ramos-Cejudo; Thomas Wisniewski; Charles Marmar; Henrik Zetterberg; Kaj Blennow; Mony J de Leon; Silvia Fossati
Journal:  EBioMedicine       Date:  2018-01-31       Impact factor: 8.143

Review 9.  Autotaxin⁻Lysophosphatidic Acid Signaling in Alzheimer's Disease.

Authors:  Sindhu Ramesh; Manoj Govindarajulu; Vishnu Suppiramaniam; Timothy Moore; Muralikrishnan Dhanasekaran
Journal:  Int J Mol Sci       Date:  2018-06-21       Impact factor: 5.923

Review 10.  Using protein engineering to understand and modulate aggregation.

Authors:  Jessica S Ebo; Nicolas Guthertz; Sheena E Radford; David J Brockwell
Journal:  Curr Opin Struct Biol       Date:  2020-02-19       Impact factor: 6.809

  10 in total

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