Literature DB >> 23101613

Site-specific coupling of hydration water and protein flexibility studied in solution with ultrafast 2D-IR spectroscopy.

John T King1, Kevin J Kubarych.   

Abstract

There is considerable evidence for the slaving of biomolecular dynamics to the motions of the surrounding solvent environment, but to date there have been few direct experimental measurements capable of site-selectively probing both the dynamics of the water and the protein with ultrafast time resolution. Here, two-dimensional infrared spectroscopy (2D-IR) is used to study the ultrafast hydration and protein dynamics sensed by a metal carbonyl vibrational probe covalently attached to the surface of hen egg white lysozyme dissolved in D(2)O/glycerol solutions. Surface labeling provides direct access to the dynamics at the protein-water interface, where both the hydration and the protein dynamics can be observed simultaneously through the vibrational probe's frequency-frequency correlation function. In pure D(2)O, the correlation function shows a fast initial 3 ps decay corresponding to fluctuations of the hydration water, followed by a significant static offset attributed to fluctuations of the protein that are not sampled within the <20 ps experimental window. Adding glycerol increases the bulk solvent viscosity while leaving the protein structurally intact and hydrated. The hydration dynamics exhibit a greater than 3-fold slowdown between 0 and 80% glycerol (v/v), and the contribution from the protein's dynamics is found to slow in a nearly identical fashion. In addition, the magnitude of the dynamic slowdown associated with hydrophobic hydration is directly measured and shows quantitative agreement with predictions from molecular dynamics simulations.

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Year:  2012        PMID: 23101613     DOI: 10.1021/ja307401r

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  42 in total

1.  Defining a length scale for millisecond-timescale protein conformational exchange.

Authors:  Ashok Sekhar; Pramodh Vallurupalli; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-25       Impact factor: 11.205

2.  Experimental implementations of 2D IR spectroscopy through a horizontal pulse shaper design and a focal plane array detector.

Authors:  Ayanjeet Ghosh; Arnaldo L Serrano; Tracey A Oudenhoven; Joshua S Ostrander; Elliot C Eklund; Alexander F Blair; Martin T Zanni
Journal:  Opt Lett       Date:  2016-02-01       Impact factor: 3.776

Review 3.  Applications of two-dimensional infrared spectroscopy.

Authors:  Amanda L Le Sueur; Rachel E Horness; Megan C Thielges
Journal:  Analyst       Date:  2015-07-07       Impact factor: 4.616

4.  Heterogeneous and Highly Dynamic Interface in Plastocyanin-Cytochrome f Complex Revealed by Site-Specific 2D-IR Spectroscopy.

Authors:  Sashary Ramos; Amanda L Le Sueur; Rachel E Horness; Jonathan T Specker; Jessica A Collins; Katherine E Thibodeau; Megan C Thielges
Journal:  J Phys Chem B       Date:  2019-02-21       Impact factor: 2.991

5.  Using Hydrazine to Link Ferrocene with Re(CO)3: A Modular Approach.

Authors:  Kullapa Chanawanno; Hannah M Rhoda; Abed Hasheminasab; Laura A Crandall; Alexander J King; Richard S Herrick; Victor N Nemykin; Christopher J Ziegler
Journal:  J Organomet Chem       Date:  2016-06-07       Impact factor: 2.369

6.  Synthesis and Protein Incorporation of Azido-Modified Unnatural Amino Acids.

Authors:  Elise M Tookmanian; Edward E Fenlon; Scott H Brewer
Journal:  RSC Adv       Date:  2014-12-02       Impact factor: 3.361

Review 7.  Watching Proteins Wiggle: Mapping Structures with Two-Dimensional Infrared Spectroscopy.

Authors:  Ayanjeet Ghosh; Joshua S Ostrander; Martin T Zanni
Journal:  Chem Rev       Date:  2017-01-06       Impact factor: 60.622

8.  An alternative structural isoform in amyloid-like aggregates formed from thermally denatured human γD-crystallin.

Authors:  Sean D Moran; Tianqi O Zhang; Martin T Zanni
Journal:  Protein Sci       Date:  2014-02-04       Impact factor: 6.725

Review 9.  Site-specific infrared probes of proteins.

Authors:  Jianqiang Ma; Ileana M Pazos; Wenkai Zhang; Robert M Culik; Feng Gai
Journal:  Annu Rev Phys Chem       Date:  2015-01-12       Impact factor: 12.703

10.  Anomalously Rapid Hydration Water Diffusion Dynamics Near DNA Surfaces.

Authors:  John M Franck; Yuan Ding; Katherine Stone; Peter Z Qin; Songi Han
Journal:  J Am Chem Soc       Date:  2015-09-10       Impact factor: 15.419

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