Literature DB >> 23097510

The genomics of adaptation.

Jacek Radwan1, Wiesław Babik.   

Abstract

The amount and nature of genetic variation available to natural selection affect the rate, course and outcome of evolution. Consequently, the study of the genetic basis of adaptive evolutionary change has occupied biologists for decades, but progress has been hampered by the lack of resolution and the absence of a genome-level perspective. Technological advances in recent years should now allow us to answer many long-standing questions about the nature of adaptation. The data gathered so far are beginning to challenge some widespread views of the way in which natural selection operates at the genomic level. Papers in this Special Feature of Proceedings of the Royal Society B illustrate various aspects of the broad field of adaptation genomics. This introductory article sets up a context and, on the basis of a few selected examples, discusses how genomic data can advance our understanding of the process of adaptation.

Mesh:

Year:  2012        PMID: 23097510      PMCID: PMC3497254          DOI: 10.1098/rspb.2012.2322

Source DB:  PubMed          Journal:  Proc Biol Sci        ISSN: 0962-8452            Impact factor:   5.349


  61 in total

Review 1.  The genetic architecture of quantitative traits.

Authors:  T F Mackay
Journal:  Annu Rev Genet       Date:  2001       Impact factor: 16.830

2.  The origins of genome complexity.

Authors:  Michael Lynch; John S Conery
Journal:  Science       Date:  2003-11-21       Impact factor: 47.728

Review 3.  Genes and speciation.

Authors:  Chung-I Wu; Chau-Ti Ting
Journal:  Nat Rev Genet       Date:  2004-02       Impact factor: 53.242

4.  Genetic signatures of strong recent positive selection at the lactase gene.

Authors:  Todd Bersaglieri; Pardis C Sabeti; Nick Patterson; Trisha Vanderploeg; Steve F Schaffner; Jared A Drake; Matthew Rhodes; David E Reich; Joel N Hirschhorn
Journal:  Am J Hum Genet       Date:  2004-04-26       Impact factor: 11.025

5.  Genetic and developmental basis of evolutionary pelvic reduction in threespine sticklebacks.

Authors:  Michael D Shapiro; Melissa E Marks; Catherine L Peichel; Benjamin K Blackman; Kirsten S Nereng; Bjarni Jónsson; Dolph Schluter; David M Kingsley
Journal:  Nature       Date:  2004-04-15       Impact factor: 49.962

6.  Transfer and origin of adaptations through natural hybridization: were Anderson and Stebbins right?

Authors:  Michael L Arnold
Journal:  Plant Cell       Date:  2004-03       Impact factor: 11.277

Review 7.  The evolutionary significance of cis-regulatory mutations.

Authors:  Gregory A Wray
Journal:  Nat Rev Genet       Date:  2007-03       Impact factor: 53.242

8.  Population genomics and local adaptation in wild isolates of a model microbial eukaryote.

Authors:  Christopher E Ellison; Charles Hall; David Kowbel; Juliet Welch; Rachel B Brem; N L Glass; John W Taylor
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-31       Impact factor: 11.205

9.  Consequences of recombination rate variation on quantitative trait locus mapping studies. Simulations based on the Drosophila melanogaster genome.

Authors:  M A Noor; A L Cunningham; J C Larkin
Journal:  Genetics       Date:  2001-10       Impact factor: 4.562

10.  Selection in the evolution of gene duplications.

Authors:  Fyodor A Kondrashov; Igor B Rogozin; Yuri I Wolf; Eugene V Koonin
Journal:  Genome Biol       Date:  2002-01-14       Impact factor: 13.583

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  20 in total

1.  Evolution of stickleback in 50 years on earthquake-uplifted islands.

Authors:  Emily A Lescak; Susan L Bassham; Julian Catchen; Ofer Gelmond; Mary L Sherbick; Frank A von Hippel; William A Cresko
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-14       Impact factor: 11.205

2.  Editorial 2015.

Authors:  Michael Hassell
Journal:  Proc Biol Sci       Date:  2015-01-07       Impact factor: 5.349

3.  Genomes reveal drastic and recurrent phenotypic divergence in firetip skipper butterflies (Hesperiidae: Pyrrhopyginae).

Authors:  Jing Zhang; Qian Cong; Jinhui Shen; Ernst Brockmann; Nick V Grishin
Journal:  Proc Biol Sci       Date:  2019-05-29       Impact factor: 5.349

4.  Repeated Selection of Alternatively Adapted Haplotypes Creates Sweeping Genomic Remodeling in Stickleback.

Authors:  Susan Bassham; Julian Catchen; Emily Lescak; Frank A von Hippel; William A Cresko
Journal:  Genetics       Date:  2018-05-24       Impact factor: 4.562

5.  Sympatric incipient speciation of spiny mice Acomys at "Evolution Canyon," Israel.

Authors:  Yarin Hadid; Tomás Pavlícek; Avigdor Beiles; Ron Ianovici; Shmuel Raz; Eviatar Nevo
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-08       Impact factor: 11.205

Review 6.  Next-Generation Sequencing and Its Impacts on Entomological Research in Ecology and Evolution.

Authors:  Débora Pires Paula
Journal:  Neotrop Entomol       Date:  2021-08-10       Impact factor: 1.434

7.  Genome sequencing and population genomics modeling provide insights into the local adaptation of weeping forsythia.

Authors:  Lin-Feng Li; Samuel A Cushman; Yan-Xia He; Yong Li
Journal:  Hortic Res       Date:  2020-08-01       Impact factor: 6.793

8.  Differential strengths of positive selection revealed by hitchhiking effects at small physical scales in Drosophila melanogaster.

Authors:  Yuh Chwen G Lee; Charles H Langley; David J Begun
Journal:  Mol Biol Evol       Date:  2013-12-20       Impact factor: 16.240

9.  Fast evolution from precast bricks: genomics of young freshwater populations of threespine stickleback Gasterosteus aculeatus.

Authors:  Nadezhda V Terekhanova; Maria D Logacheva; Aleksey A Penin; Tatiana V Neretina; Anna E Barmintseva; Georgii A Bazykin; Alexey S Kondrashov; Nikolai S Mugue
Journal:  PLoS Genet       Date:  2014-10-09       Impact factor: 5.917

10.  Signatures of natural selection between life cycle stages separated by metamorphosis in European eel.

Authors:  J M Pujolar; M W Jacobsen; D Bekkevold; J Lobón-Cervià; B Jónsson; L Bernatchez; M M Hansen
Journal:  BMC Genomics       Date:  2015-08-13       Impact factor: 3.969

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