Literature DB >> 34374956

Next-Generation Sequencing and Its Impacts on Entomological Research in Ecology and Evolution.

Débora Pires Paula1.   

Abstract

The advent of NGS-based methods has been profoundly transforming entomological research. Through continual development and improvement of different methods and sequencing platforms, NGS has promoted mass elucidation of partial or whole genetic materials associated with beneficial insects, pests (of agriculture, forestry and animal, and human health), and species of conservation concern, helping to unravel ecological and evolutionary mechanisms and characterizing survival, trophic interactions, and dispersal. It is shifting the scale of biodiversity and environmental analyses from individuals and biodiversity indicator species to the large-scale study of communities and ecosystems using bulk samples of species or a mixed "soup" of environmental DNA. As the NGS-based methods have become more affordable, complexity demystified, and specificity and sensitivity proven, their use in entomological research has spread widely. This article presents several examples on how NGS-based methods have been used in entomology to provide incentives to apply them when appropriate and to open our minds to the expected advances in entomology that are yet to come.
© 2021. Sociedade Entomológica do Brasil.

Entities:  

Keywords:  Agroecosystems; NGS; conservative biological control; ecosystem services; food webs; insect-vectored diseases; pollination

Year:  2021        PMID: 34374956     DOI: 10.1007/s13744-021-00895-x

Source DB:  PubMed          Journal:  Neotrop Entomol        ISSN: 1519-566X            Impact factor:   1.434


  120 in total

1.  Phylogenetic community ecology of soil biodiversity using mitochondrial metagenomics.

Authors:  Carmelo Andújar; Paula Arribas; Filip Ruzicka; Alex Crampton-Platt; Martijn J T N Timmermans; Alfried P Vogler
Journal:  Mol Ecol       Date:  2015-05-14       Impact factor: 6.185

2.  Arthropod diversity in a tropical forest.

Authors:  Yves Basset; Lukas Cizek; Philippe Cuénoud; Raphael K Didham; François Guilhaumon; Olivier Missa; Vojtech Novotny; Frode Ødegaard; Tomas Roslin; Jürgen Schmidl; Alexey K Tishechkin; Neville N Winchester; David W Roubik; Henri-Pierre Aberlenc; Johannes Bail; Héctor Barrios; Jon R Bridle; Gabriela Castaño-Meneses; Bruno Corbara; Gianfranco Curletti; Wesley Duarte da Rocha; Domir De Bakker; Jacques H C Delabie; Alain Dejean; Laura L Fagan; Andreas Floren; Roger L Kitching; Enrique Medianero; Scott E Miller; Evandro Gama de Oliveira; Jérôme Orivel; Marc Pollet; Mathieu Rapp; Sérvio P Ribeiro; Yves Roisin; Jesper B Schmidt; Line Sørensen; Maurice Leponce
Journal:  Science       Date:  2012-12-14       Impact factor: 47.728

Review 3.  Pollen DNA barcoding: current applications and future prospects.

Authors:  Karen L Bell; Natasha de Vere; Alexander Keller; Rodney T Richardson; Annemarie Gous; Kevin S Burgess; Berry J Brosi
Journal:  Genome       Date:  2016-04-13       Impact factor: 2.166

4.  Automated DNA sequencing: ultrasensitive detection of fluorescent bands during electrophoresis.

Authors:  W Ansorge; B Sproat; J Stegemann; C Schwager; M Zenke
Journal:  Nucleic Acids Res       Date:  1987-06-11       Impact factor: 16.971

5.  A non-radioactive automated method for DNA sequence determination.

Authors:  W Ansorge; B S Sproat; J Stegemann; C Schwager
Journal:  J Biochem Biophys Methods       Date:  1986-12

6.  Mountain pine beetles colonizing historical and naive host trees are associated with a bacterial community highly enriched in genes contributing to terpene metabolism.

Authors:  Aaron S Adams; Frank O Aylward; Sandye M Adams; Nadir Erbilgin; Brian H Aukema; Cameron R Currie; Garret Suen; Kenneth F Raffa
Journal:  Appl Environ Microbiol       Date:  2013-03-29       Impact factor: 4.792

7.  Global invasion history of the fire ant Solenopsis invicta.

Authors:  Marina S Ascunce; Chin-Cheng Yang; Jane Oakey; Luis Calcaterra; Wen-Jer Wu; Cheng-Jen Shih; Jérôme Goudet; Kenneth G Ross; DeWayne Shoemaker
Journal:  Science       Date:  2011-02-25       Impact factor: 47.728

8.  Genomic toolboxes for conservation biologists.

Authors:  Francesco Angeloni; Niels Wagemaker; Philippine Vergeer; Joop Ouborg
Journal:  Evol Appl       Date:  2011-11-17       Impact factor: 5.183

9.  A genome-wide, fine-scale map of natural pigmentation variation in Drosophila melanogaster.

Authors:  Héloïse Bastide; Andrea Betancourt; Viola Nolte; Raymond Tobler; Petra Stöbe; Andreas Futschik; Christian Schlötterer
Journal:  PLoS Genet       Date:  2013-06-06       Impact factor: 6.020

10.  Rapid SNP discovery and genetic mapping using sequenced RAD markers.

Authors:  Nathan A Baird; Paul D Etter; Tressa S Atwood; Mark C Currey; Anthony L Shiver; Zachary A Lewis; Eric U Selker; William A Cresko; Eric A Johnson
Journal:  PLoS One       Date:  2008-10-13       Impact factor: 3.240

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  1 in total

1.  Metabarcoding versus mapping unassembled shotgun reads for identification of prey consumed by arthropod epigeal predators.

Authors:  Débora Pires Paula; Suellen Karina Albertoni Barros; Rafael Major Pitta; Marliton Rocha Barreto; Roberto Coiti Togawa; David A Andow
Journal:  Gigascience       Date:  2022-03-24       Impact factor: 6.524

  1 in total

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