Literature DB >> 23097409

Automated unsupervised multi-parametric classification of adipose tissue depots in skeletal muscle.

Alexander Valentinitsch1, Dimitrios C Karampinos, Hamza Alizai, Karupppasamy Subburaj, Deepak Kumar, Thomas M Link, Sharmila Majumdar.   

Abstract

PURPOSE: To introduce and validate an automated unsupervised multi-parametric method for segmentation of the subcutaneous fat and muscle regions to determine subcutaneous adipose tissue (SAT) and intermuscular adipose tissue (IMAT) areas based on data from a quantitative chemical shift-based water-fat separation approach.
MATERIALS AND METHODS: Unsupervised standard k-means clustering was used to define sets of similar features (k = 2) within the whole multi-modal image after the water-fat separation. The automated image processing chain was composed of three primary stages: tissue, muscle, and bone region segmentation. The algorithm was applied on calf and thigh datasets to compute SAT and IMAT areas and was compared with a manual segmentation.
RESULTS: The IMAT area using the automatic segmentation had excellent agreement with the IMAT area using the manual segmentation for all the cases in the thigh (R(2): 0.96) and for cases with up to moderate IMAT area in the calf (R(2): 0.92). The group with the highest grade of muscle fat infiltration in the calf had the highest error in the inner SAT contour calculation.
CONCLUSION: The proposed multi-parametric segmentation approach combined with quantitative water-fat imaging provides an accurate and reliable method for an automated calculation of the SAT and IMAT areas reducing considerably the total postprocessing time.
Copyright © 2012 Wiley Periodicals, Inc.

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Mesh:

Year:  2012        PMID: 23097409      PMCID: PMC3573225          DOI: 10.1002/jmri.23884

Source DB:  PubMed          Journal:  J Magn Reson Imaging        ISSN: 1053-1807            Impact factor:   4.813


  37 in total

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Authors:  Anqi Zhou; Horacio Murillo; Qi Peng
Journal:  J Magn Reson Imaging       Date:  2011-09-30       Impact factor: 4.813

2.  Iterative decomposition of water and fat with echo asymmetry and least-squares estimation (IDEAL): application with fast spin-echo imaging.

Authors:  Scott B Reeder; Angel R Pineda; Zhifei Wen; Ann Shimakawa; Huanzhou Yu; Jean H Brittain; Garry E Gold; Christopher H Beaulieu; Norbert J Pelc
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3.  Relaxation effects in the quantification of fat using gradient echo imaging.

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4.  Fat quantification with IDEAL gradient echo imaging: correction of bias from T(1) and noise.

Authors:  Chia-Ying Liu; Charles A McKenzie; Huanzhou Yu; Jean H Brittain; Scott B Reeder
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5.  Evaluation of correction methods for coil-induced intensity inhomogeneities and their influence on trabecular bone structure parameters from MR images.

Authors:  Jenny Folkesson; Roland Krug; Janet Goldenstein; Ahi S Issever; Charles Fang; Thomas M Link; Sharmila Majumdar
Journal:  Med Phys       Date:  2009-04       Impact factor: 4.071

6.  Age and gender related effects on adipose tissue compartments of subjects with increased risk for type 2 diabetes: a whole body MRI/MRS study.

Authors:  J Machann; C Thamer; B Schnoedt; N Stefan; M Stumvoll; H-U Haring; C D Claussen; A Fritsche; F Schick
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7.  Combination of complex-based and magnitude-based multiecho water-fat separation for accurate quantification of fat-fraction.

Authors:  Huanzhou Yu; Ann Shimakawa; Catherine D G Hines; Charles A McKenzie; Gavin Hamilton; Claude B Sirlin; Jean H Brittain; Scott B Reeder
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8.  In vivo T(1rho) and T(2) mapping of articular cartilage in osteoarthritis of the knee using 3 T MRI.

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9.  Follow-up whole-body assessment of adipose tissue compartments during a lifestyle intervention in a large cohort at increased risk for type 2 diabetes.

Authors:  Jürgen Machann; Claus Thamer; Norbert Stefan; Nina F Schwenzer; Konstantinos Kantartzis; Hans-Ulrich Häring; Claus D Claussen; Andreas Fritsche; Fritz Schick
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10.  Intermuscular adipose tissue (IMAT): association with other adipose tissue compartments and insulin sensitivity.

Authors:  Michael Boettcher; Jürgen Machann; Norbert Stefan; Claus Thamer; Hans-Ulrich Häring; Claus D Claussen; Andreas Fritsche; Fritz Schick
Journal:  J Magn Reson Imaging       Date:  2009-06       Impact factor: 4.813

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  14 in total

Review 1.  Quantitative proton MR techniques for measuring fat.

Authors:  H H Hu; H E Kan
Journal:  NMR Biomed       Date:  2013-10-03       Impact factor: 4.044

2.  Automated Segmentation of Tissues Using CT and MRI: A Systematic Review.

Authors:  Leon Lenchik; Laura Heacock; Ashley A Weaver; Robert D Boutin; Tessa S Cook; Jason Itri; Christopher G Filippi; Rao P Gullapalli; James Lee; Marianna Zagurovskaya; Tara Retson; Kendra Godwin; Joey Nicholson; Ponnada A Narayana
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Review 3.  MRI adipose tissue and muscle composition analysis-a review of automation techniques.

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4.  Automated assessment of thigh composition using machine learning for Dixon magnetic resonance images.

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5.  3D multimodal spatial fuzzy segmentation of intramuscular connective and adipose tissue from ultrashort TE MR images of calf muscle.

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Journal:  Magn Reson Med       Date:  2016-02-19       Impact factor: 4.668

Review 6.  Ultrasound and magnetic resonance imaging as diagnostic tools for sarcopenia in immune-mediated rheumatic diseases (IMRDs).

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7.  Quadriceps intramuscular fat fraction rather than muscle size is associated with knee osteoarthritis.

Authors:  D Kumar; D C Karampinos; T D MacLeod; W Lin; L Nardo; X Li; T M Link; S Majumdar; R B Souza
Journal:  Osteoarthritis Cartilage       Date:  2013-12-20       Impact factor: 6.576

Review 8.  Segmentation and quantification of adipose tissue by magnetic resonance imaging.

Authors:  Houchun Harry Hu; Jun Chen; Wei Shen
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9.  Fully automated 3D segmentation of MR-imaged calf muscle compartments: Neighborhood relationship enhanced fully convolutional network.

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10.  Muscle Quantitative MR Imaging and Clustering Analysis in Patients with Facioscapulohumeral Muscular Dystrophy Type 1.

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Journal:  PLoS One       Date:  2015-07-16       Impact factor: 3.240

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