Literature DB >> 23086202

Engineering a thermoregulated intein-modified xylanase into maize for consolidated lignocellulosic biomass processing.

Binzhang Shen1, Xueguang Sun, Xiao Zuo, Taran Shilling, James Apgar, Mary Ross, Oleg Bougri, Vladimir Samoylov, Matthew Parker, Elaina Hancock, Hector Lucero, Benjamin Gray, Nathan A Ekborg, Dongcheng Zhang, Jeremy C Schley Johnson, Gabor Lazar, R Michael Raab.   

Abstract

Plant cellulosic biomass is an abundant, low-cost feedstock for producing biofuels and chemicals. Expressing cell wall-degrading (CWD) enzymes (e.g. xylanases) in plant feedstocks could reduce the amount of enzymes required for feedstock pretreatment and hydrolysis during bioprocessing to release soluble sugars. However, in planta expression of xylanases can reduce biomass yield and plant fertility. To overcome this problem, we engineered a thermostable xylanase (XynB) with a thermostable self-splicing bacterial intein to control the xylanase activity. Intein-modified XynB (iXynB) variants were selected that have <10% wild-type enzymatic activity but recover >60% enzymatic activity upon intein self-splicing at temperatures >59 °C. Greenhouse-grown xynB maize expressing XynB has shriveled seeds and low fertility, but ixynB maize had normal seeds and fertility. Processing dried ixynB maize stover by temperature-regulated xylanase activation and hydrolysis in a cocktail of commercial CWD enzymes produced >90% theoretical glucose and >63% theoretical xylose yields.

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Year:  2012        PMID: 23086202     DOI: 10.1038/nbt.2402

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  55 in total

1.  An in vivo screening system against protein splicing useful for the isolation of non-splicing mutants or inhibitors of the RecA intein of Mycobacterium tuberculosis.

Authors:  Belinda M Lew; Henry Paulus
Journal:  Gene       Date:  2002-01-09       Impact factor: 3.688

2.  The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling.

Authors:  Konstantin Arnold; Lorenza Bordoli; Jürgen Kopp; Torsten Schwede
Journal:  Bioinformatics       Date:  2005-11-13       Impact factor: 6.937

3.  Structure prediction of domain insertion proteins from structures of individual domains.

Authors:  Monica Berrondo; Marc Ostermeier; Jeffrey J Gray
Journal:  Structure       Date:  2008-04       Impact factor: 5.006

4.  The mechanism of protein splicing and its modulation by mutation.

Authors:  M Q Xu; F B Perler
Journal:  EMBO J       Date:  1996-10-01       Impact factor: 11.598

5.  Protein trans-splicing in transgenic plant chloroplast: reconstruction of herbicide resistance from split genes.

Authors:  Hang Gyeong Chin; Gun-Do Kim; Ivan Marin; Fana Mersha; Thomas C Evans; Lixin Chen; Ming-Qun Xu; Sriharsa Pradhan
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-01       Impact factor: 11.205

6.  Two barley alpha-amylase gene families are regulated differently in aleurone cells.

Authors:  J C Rogers
Journal:  J Biol Chem       Date:  1985-03-25       Impact factor: 5.157

7.  Cellulase digestibility of pretreated biomass is limited by cellulose accessibility.

Authors:  Tina Jeoh; Claudia I Ishizawa; Mark F Davis; Michael E Himmel; William S Adney; David K Johnson
Journal:  Biotechnol Bioeng       Date:  2007-09-01       Impact factor: 4.530

8.  The genome sequence of the extreme thermophile Thermus thermophilus.

Authors:  Anke Henne; Holger Brüggemann; Carsten Raasch; Arnim Wiezer; Thomas Hartsch; Heiko Liesegang; Andre Johann; Tanja Lienard; Olivia Gohl; Rosa Martinez-Arias; Carsten Jacobi; Vytaute Starkuviene; Silke Schlenczeck; Silke Dencker; Robert Huber; Hans-Peter Klenk; Wilfried Kramer; Rainer Merkl; Gerhard Gottschalk; Hans-Joachim Fritz
Journal:  Nat Biotechnol       Date:  2004-04-04       Impact factor: 54.908

Review 9.  Inhibition of ethanol-producing yeast and bacteria by degradation products produced during pre-treatment of biomass.

Authors:  H B Klinke; A B Thomsen; B K Ahring
Journal:  Appl Microbiol Biotechnol       Date:  2004-08-06       Impact factor: 4.813

10.  The SWISS-MODEL Repository and associated resources.

Authors:  Florian Kiefer; Konstantin Arnold; Michael Künzli; Lorenza Bordoli; Torsten Schwede
Journal:  Nucleic Acids Res       Date:  2008-10-18       Impact factor: 16.971

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  24 in total

1.  Peptide backbone circularization enhances antifreeze protein thermostability.

Authors:  Corey A Stevens; Joanna Semrau; Dragos Chiriac; Morgan Litschko; Robert L Campbell; David N Langelaan; Steven P Smith; Peter L Davies; John S Allingham
Journal:  Protein Sci       Date:  2017-07-25       Impact factor: 6.725

Review 2.  Intein applications: from protein purification and labeling to metabolic control methods.

Authors:  David W Wood; Julio A Camarero
Journal:  J Biol Chem       Date:  2014-04-02       Impact factor: 5.157

Review 3.  Biotechnological Applications of Protein Splicing.

Authors:  Corina Sarmiento; Julio A Camarero
Journal:  Curr Protein Pept Sci       Date:  2019       Impact factor: 3.272

4.  In planta production and characterization of a hyperthermostable GH10 xylanase in transgenic sugarcane.

Authors:  Jae Yoon Kim; Guang Nong; John D Rice; Maria Gallo; James F Preston; Fredy Altpeter
Journal:  Plant Mol Biol       Date:  2016-12-22       Impact factor: 4.076

5.  Functional co-expression of a fungal ferulic acid esterase and a β-1,4 endoxylanase in Festuca arundinacea (tall fescue) modifies post-harvest cell wall deconstruction.

Authors:  Marcia M de O Buanafina; Sue Dalton; Tim Langdon; E Timms-Taravella; Erica A Shearer; Phillip Morris
Journal:  Planta       Date:  2015-04-09       Impact factor: 4.116

Review 6.  Destructuring plant biomass: focus on fungal and extremophilic cell wall hydrolases.

Authors:  Gea Guerriero; Jean-Francois Hausman; Joseph Strauss; Haluk Ertan; Khawar Sohail Siddiqui
Journal:  Plant Sci       Date:  2015-02-25       Impact factor: 4.729

7.  Construction and Quantitation of a Selectable Protein Splicing Sensor Using Gibson Assembly and Spot Titers.

Authors:  Daniel Woods; Danielle S LeSassier; Ikechukwu Egbunam; Christopher W Lennon
Journal:  Curr Protoc       Date:  2021-03

8.  Towards a carbon-negative sustainable bio-based economy.

Authors:  Bartel Vanholme; Tom Desmet; Frederik Ronsse; Korneel Rabaey; Frank Van Breusegem; Marjan De Mey; Wim Soetaert; Wout Boerjan
Journal:  Front Plant Sci       Date:  2013-06-03       Impact factor: 5.753

9.  Advances in the genetic dissection of plant cell walls: tools and resources available in Miscanthus.

Authors:  Gancho Slavov; Gordon Allison; Maurice Bosch
Journal:  Front Plant Sci       Date:  2013-07-04       Impact factor: 5.753

10.  Recent advances in in vivo applications of intein-mediated protein splicing.

Authors:  Natalya I Topilina; Kenneth V Mills
Journal:  Mob DNA       Date:  2014-02-04
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