Literature DB >> 23084945

Toward awakening cryptic secondary metabolite gene clusters in filamentous fungi.

Fang Yun Lim1, James F Sanchez, Clay C C Wang, Nancy P Keller.   

Abstract

Mining for novel natural compounds is of eminent importance owing to the continuous need for new pharmaceuticals. Filamentous fungi are historically known to harbor the genetic capacity for an arsenal of natural compounds, both beneficial and detrimental to humans. The majority of these metabolites are still cryptic or silent under standard laboratory culture conditions. Mining for these cryptic natural products can be an excellent source for identifying new compound classes. Capitalizing on the current knowledge on how secondary metabolite gene clusters are regulated has allowed the research community to unlock many hidden fungal treasures, as described in this chapter.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 23084945      PMCID: PMC3703436          DOI: 10.1016/B978-0-12-404634-4.00015-2

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  45 in total

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2.  Activation of a silent fungal polyketide biosynthesis pathway through regulatory cross talk with a cryptic nonribosomal peptide synthetase gene cluster.

Authors:  Sebastian Bergmann; Alexander N Funk; Kirstin Scherlach; Volker Schroeckh; Ekaterina Shelest; Uwe Horn; Christian Hertweck; Axel A Brakhage
Journal:  Appl Environ Microbiol       Date:  2010-10-15       Impact factor: 4.792

3.  Disruption of a nonribosomal peptide synthetase in Aspergillus fumigatus eliminates gliotoxin production.

Authors:  Robert A Cramer; Michael P Gamcsik; Rhea M Brooking; Laura K Najvar; William R Kirkpatrick; Thomas F Patterson; Carl J Balibar; John R Graybill; John R Perfect; Soman N Abraham; William J Steinbach
Journal:  Eukaryot Cell       Date:  2006-06

4.  Effect of competition on the production and activity of secondary metabolites in Aspergillus species.

Authors:  Liliana Losada; Olufinmilola Ajayi; Jens C Frisvad; Jiujiang Yu; William C Nierman
Journal:  Med Mycol       Date:  2009-02-28       Impact factor: 4.076

5.  FfVel1 and FfLae1, components of a velvet-like complex in Fusarium fujikuroi, affect differentiation, secondary metabolism and virulence.

Authors:  Philipp Wiemann; Daren W Brown; Karin Kleigrewe; Jin Woo Bok; Nancy P Keller; Hans-Ulrich Humpf; Bettina Tudzynski
Journal:  Mol Microbiol       Date:  2010-06-21       Impact factor: 3.501

Review 6.  Recent advances in awakening silent biosynthetic gene clusters and linking orphan clusters to natural products in microorganisms.

Authors:  Yi-Ming Chiang; Shu-Lin Chang; Berl R Oakley; Clay C C Wang
Journal:  Curr Opin Chem Biol       Date:  2010-11-24       Impact factor: 8.822

7.  Transformation of Aspergillus nidulans by using a trpC plasmid.

Authors:  M M Yelton; J E Hamer; W E Timberlake
Journal:  Proc Natl Acad Sci U S A       Date:  1984-03       Impact factor: 11.205

8.  Transcriptional profiling identifies a role for BrlA in the response to nitrogen depletion and for StuA in the regulation of secondary metabolite clusters in Aspergillus fumigatus.

Authors:  Kwame Twumasi-Boateng; Yan Yu; Dan Chen; Fabrice N Gravelat; William C Nierman; Donald C Sheppard
Journal:  Eukaryot Cell       Date:  2008-11-21

9.  antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences.

Authors:  Marnix H Medema; Kai Blin; Peter Cimermancic; Victor de Jager; Piotr Zakrzewski; Michael A Fischbach; Tilmann Weber; Eriko Takano; Rainer Breitling
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10.  A proteomics approach to discovering natural products and their biosynthetic pathways.

Authors:  Stefanie B Bumpus; Bradley S Evans; Paul M Thomas; Ioanna Ntai; Neil L Kelleher
Journal:  Nat Biotechnol       Date:  2009-09-20       Impact factor: 54.908

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  44 in total

Review 1.  The re-emergence of natural products for drug discovery in the genomics era.

Authors:  Alan L Harvey; RuAngelie Edrada-Ebel; Ronald J Quinn
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2.  Large-scale metabolomics reveals a complex response of Aspergillus nidulans to epigenetic perturbation.

Authors:  Jessica C Albright; Matthew T Henke; Alexandra A Soukup; Ryan A McClure; Regan J Thomson; Nancy P Keller; Neil L Kelleher
Journal:  ACS Chem Biol       Date:  2015-04-03       Impact factor: 5.100

3.  Co-ordination between BrlA regulation and secretion of the oxidoreductase FmqD directs selective accumulation of fumiquinazoline C to conidial tissues in Aspergillus fumigatus.

Authors:  Fang Yun Lim; Brian Ames; Christopher T Walsh; Nancy P Keller
Journal:  Cell Microbiol       Date:  2014-04-15       Impact factor: 3.715

4.  Overexpression of an LaeA-like Methyltransferase Upregulates Secondary Metabolite Production in Aspergillus nidulans.

Authors:  Michelle F Grau; Ruth Entwistle; C Elizabeth Oakley; Clay C C Wang; Berl R Oakley
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5.  Comprehensive curation and analysis of fungal biosynthetic gene clusters of published natural products.

Authors:  Yong Fuga Li; Kathleen J S Tsai; Colin J B Harvey; James Jian Li; Beatrice E Ary; Erin E Berlew; Brenna L Boehman; David M Findley; Alexandra G Friant; Christopher A Gardner; Michael P Gould; Jae H Ha; Brenna K Lilley; Emily L McKinstry; Saadia Nawal; Robert C Parry; Kristina W Rothchild; Samantha D Silbert; Michael D Tentilucci; Alana M Thurston; Rebecca B Wai; Yongjin Yoon; Raeka S Aiyar; Marnix H Medema; Maureen E Hillenmeyer; Louise K Charkoudian
Journal:  Fungal Genet Biol       Date:  2016-01-22       Impact factor: 3.495

6.  TrpE feedback mutants reveal roadblocks and conduits toward increasing secondary metabolism in Aspergillus fumigatus.

Authors:  Pin-Mei Wang; Tsokyi Choera; Philipp Wiemann; Tippapha Pisithkul; Daniel Amador-Noguez; Nancy P Keller
Journal:  Fungal Genet Biol       Date:  2015-12-14       Impact factor: 3.495

7.  Hybrid Transcription Factor Engineering Activates the Silent Secondary Metabolite Gene Cluster for (+)-Asperlin in Aspergillus nidulans.

Authors:  Michelle F Grau; Ruth Entwistle; Yi-Ming Chiang; Manmeet Ahuja; C Elizabeth Oakley; Tomohiro Akashi; Clay C C Wang; Richard B Todd; Berl R Oakley
Journal:  ACS Chem Biol       Date:  2018-10-29       Impact factor: 5.100

8.  Purple chromoprotein gene serves as a new selection marker for transgenesis of the microalga Nannochloropsis oculata.

Authors:  Chen-Han Shih; Hsiao-Yin Chen; Hung-Chieh Lee; Huai-Jen Tsai
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Review 9.  Emerging concepts promising new horizons for marine biodiscovery and synthetic biology.

Authors:  F Jerry Reen; José A Gutiérrez-Barranquero; Alan D W Dobson; Claire Adams; Fergal O'Gara
Journal:  Mar Drugs       Date:  2015-05-13       Impact factor: 5.118

Review 10.  Motif-independent de novo detection of secondary metabolite gene clusters-toward identification from filamentous fungi.

Authors:  Myco Umemura; Hideaki Koike; Masayuki Machida
Journal:  Front Microbiol       Date:  2015-05-05       Impact factor: 5.640

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