Literature DB >> 21111669

Recent advances in awakening silent biosynthetic gene clusters and linking orphan clusters to natural products in microorganisms.

Yi-Ming Chiang1, Shu-Lin Chang, Berl R Oakley, Clay C C Wang.   

Abstract

Secondary metabolites from microorganisms have a broad spectrum of applications, particularly in therapeutics. The growing number of sequenced microbial genomes has revealed a remarkably large number of natural product biosynthetic clusters for which the products are still unknown. These cryptic clusters are potentially a treasure house of medically useful compounds. The recent development of new methodologies has made it possible to begin unlock this treasure house, to discover new natural products and to determine their biosynthesis pathways. This review will highlight some of the most recent strategies to activate silent biosynthetic gene clusters and to elucidate their corresponding products and pathways.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 21111669      PMCID: PMC3117463          DOI: 10.1016/j.cbpa.2010.10.011

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  34 in total

1.  Genomics-driven discovery of PKS-NRPS hybrid metabolites from Aspergillus nidulans.

Authors:  Sebastian Bergmann; Julia Schümann; Kirstin Scherlach; Corinna Lange; Axel A Brakhage; Christian Hertweck
Journal:  Nat Chem Biol       Date:  2007-03-18       Impact factor: 15.040

Review 2.  Strategies to unravel the function of orphan biosynthesis pathways: recent examples and future prospects.

Authors:  Harald Gross
Journal:  Appl Microbiol Biotechnol       Date:  2007-03-06       Impact factor: 4.813

3.  Strategies for the discovery of new natural products by genome mining.

Authors:  Malek Zerikly; Gregory L Challis
Journal:  Chembiochem       Date:  2009-03-02       Impact factor: 3.164

4.  Epigenetic remodeling of the fungal secondary metabolome.

Authors:  Russell B Williams; Jon C Henrikson; Ashley R Hoover; Andrlynn E Lee; Robert H Cichewicz
Journal:  Org Biomol Chem       Date:  2008-04-14       Impact factor: 3.876

5.  Fluorescent profiling of modular biosynthetic enzymes by complementary metabolic and activity based probes.

Authors:  Jordan L Meier; Andrew C Mercer; Michael D Burkart
Journal:  J Am Chem Soc       Date:  2008-04-01       Impact factor: 15.419

6.  Cloning and characterization of new glycopeptide gene clusters found in an environmental DNA megalibrary.

Authors:  Jacob J Banik; Sean F Brady
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-05       Impact factor: 11.205

7.  Identification and characterization of the asperthecin gene cluster of Aspergillus nidulans.

Authors:  Edyta Szewczyk; Yi-Ming Chiang; C Elizabeth Oakley; Ashley D Davidson; Clay C C Wang; Berl R Oakley
Journal:  Appl Environ Microbiol       Date:  2008-10-31       Impact factor: 4.792

8.  Exploiting the mosaic structure of trans-acyltransferase polyketide synthases for natural product discovery and pathway dissection.

Authors:  TuAnh Nguyen; Keishi Ishida; Holger Jenke-Kodama; Elke Dittmann; Cristian Gurgui; Thomas Hochmuth; Stefan Taudien; Matthias Platzer; Christian Hertweck; Jörn Piel
Journal:  Nat Biotechnol       Date:  2008-01-27       Impact factor: 54.908

9.  Construction of a citrinin gene cluster expression system in heterologous Aspergillus oryzae.

Authors:  Kanae Sakai; Hiroshi Kinoshita; Takeo Shimizu; Takuya Nihira
Journal:  J Biosci Bioeng       Date:  2008-11       Impact factor: 2.894

10.  Production of pyomelanin, a second type of melanin, via the tyrosine degradation pathway in Aspergillus fumigatus.

Authors:  Jeannette Schmaler-Ripcke; Venelina Sugareva; Peter Gebhardt; Robert Winkler; Olaf Kniemeyer; Thorsten Heinekamp; Axel A Brakhage
Journal:  Appl Environ Microbiol       Date:  2008-11-21       Impact factor: 4.792

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  64 in total

Review 1.  Activating the expression of bacterial cryptic genes by rpoB mutations in RNA polymerase or by rare earth elements.

Authors:  Kozo Ochi; Yukinori Tanaka; Shigeo Tojo
Journal:  J Ind Microbiol Biotechnol       Date:  2013-10-15       Impact factor: 3.346

2.  Clustered patterns of species origins of nature-derived drugs and clues for future bioprospecting.

Authors:  Feng Zhu; Chu Qin; Lin Tao; Xin Liu; Zhe Shi; Xiaohua Ma; Jia Jia; Ying Tan; Cheng Cui; Jinshun Lin; Chunyan Tan; Yuyang Jiang; Yuzong Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-18       Impact factor: 11.205

Review 3.  Insights into microbial cryptic gene activation and strain improvement: principle, application and technical aspects.

Authors:  Kozo Ochi
Journal:  J Antibiot (Tokyo)       Date:  2016-07-06       Impact factor: 2.649

4.  Lincomycin at Subinhibitory Concentrations Potentiates Secondary Metabolite Production by Streptomyces spp.

Authors:  Yu Imai; Seizo Sato; Yukinori Tanaka; Kozo Ochi; Takeshi Hosaka
Journal:  Appl Environ Microbiol       Date:  2015-03-27       Impact factor: 4.792

5.  Mapping Microbial Response Metabolomes for Induced Natural Product Discovery.

Authors:  Dagmara K Derewacz; Brett C Covington; John A McLean; Brian O Bachmann
Journal:  ACS Chem Biol       Date:  2015-06-17       Impact factor: 5.100

6.  Deep sequencing of non-ribosomal peptide synthetases and polyketide synthases from the microbiomes of Australian marine sponges.

Authors:  Jason N Woodhouse; Lu Fan; Mark V Brown; Torsten Thomas; Brett A Neilan
Journal:  ISME J       Date:  2013-04-18       Impact factor: 10.302

7.  Molecular genetic analysis reveals that a nonribosomal peptide synthetase-like (NRPS-like) gene in Aspergillus nidulans is responsible for microperfuranone biosynthesis.

Authors:  Hsu-Hua Yeh; Yi-Ming Chiang; Ruth Entwistle; Manmeet Ahuja; Kuan-Han Lee; Kenneth S Bruno; Tung-Kung Wu; Berl R Oakley; Clay C C Wang
Journal:  Appl Microbiol Biotechnol       Date:  2012-05-25       Impact factor: 4.813

Review 8.  Antibiotic dialogues: induction of silent biosynthetic gene clusters by exogenous small molecules.

Authors:  Bethany K Okada; Mohammad R Seyedsayamdost
Journal:  FEMS Microbiol Rev       Date:  2016-08-29       Impact factor: 16.408

Review 9.  Symbiosis-inspired approaches to antibiotic discovery.

Authors:  Navid Adnani; Scott R Rajski; Tim S Bugni
Journal:  Nat Prod Rep       Date:  2017-07-06       Impact factor: 13.423

10.  An Unconventional Melanin Biosynthesis Pathway in Ustilago maydis.

Authors:  Esmeralda Z Reyes-Fernández; Yi-Ming Shi; Peter Grün; Helge B Bode; Michael Bölker
Journal:  Appl Environ Microbiol       Date:  2021-01-15       Impact factor: 4.792

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