Literature DB >> 18928403

Dewetting and hydrophobic interaction in physical and biological systems.

Bruce J Berne1, John D Weeks, Ruhong Zhou.   

Abstract

Hydrophobicity manifests itself differently on large and small length scales. This review focuses on large-length-scale hydrophobicity, particularly on dewetting at single hydrophobic surfaces and drying in regions bounded on two or more sides by hydrophobic surfaces. We review applicable theories, simulations, and experiments pertaining to large-scale hydrophobicity in physical and biomolecular systems and clarify some of the critical issues pertaining to this subject. Given space constraints, we cannot review all the significant and interesting work in this active field.

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Year:  2009        PMID: 18928403      PMCID: PMC3898792          DOI: 10.1146/annurev.physchem.58.032806.104445

Source DB:  PubMed          Journal:  Annu Rev Phys Chem        ISSN: 0066-426X            Impact factor:   12.703


  89 in total

1.  Insufficiently dehydrated hydrogen bonds as determinants of protein interactions.

Authors:  Ariel Fernández; Harold A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-23       Impact factor: 11.205

2.  High-resolution in situ x-ray study of the hydrophobic gap at the water-octadecyl-trichlorosilane interface.

Authors:  Markus Mezger; Harald Reichert; Sebastian Schöder; John Okasinski; Heiko Schröder; Helmut Dosch; Dennis Palms; John Ralston; Veijo Honkimäki
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-20       Impact factor: 11.205

3.  Controllable water channel gating of nanometer dimensions.

Authors:  Rongzheng Wan; Jingyuan Li; Hangjun Lu; Haiping Fang
Journal:  J Am Chem Soc       Date:  2005-05-18       Impact factor: 15.419

4.  Reduced water density at hydrophobic surfaces: effect of dissolved gases.

Authors:  Dhaval A Doshi; Erik B Watkins; Jacob N Israelachvili; Jaroslaw Majewski
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-23       Impact factor: 11.205

5.  Effect of pressure on the phase behavior and structure of water confined between nanoscale hydrophobic and hydrophilic plates.

Authors:  Nicolas Giovambattista; Peter J Rossky; Pablo G Debenedetti
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-04-13

6.  Extra precision glide: docking and scoring incorporating a model of hydrophobic enclosure for protein-ligand complexes.

Authors:  Richard A Friesner; Robert B Murphy; Matthew P Repasky; Leah L Frye; Jeremy R Greenwood; Thomas A Halgren; Paul C Sanschagrin; Daniel T Mainz
Journal:  J Med Chem       Date:  2006-10-19       Impact factor: 7.446

7.  Ellipsometric study of depletion at oil-water interfaces.

Authors:  James P R Day; Colin D Bain
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-10-05

8.  Protein folding mechanisms and the multidimensional folding funnel.

Authors:  N D Socci; J N Onuchic; P G Wolynes
Journal:  Proteins       Date:  1998-08-01

9.  Effects of lengthscales and attractions on the collapse of hydrophobic polymers in water.

Authors:  Manoj V Athawale; Gaurav Goel; Tuhin Ghosh; Thomas M Truskett; Shekhar Garde
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-10       Impact factor: 11.205

10.  Interactions between hydrophobic and ionic solutes in aqueous guanidinium chloride and urea solutions: lessons for protein denaturation mechanism.

Authors:  Edward P O'Brien; Ruxandra I Dima; Bernard Brooks; D Thirumalai
Journal:  J Am Chem Soc       Date:  2007-05-16       Impact factor: 15.419

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  102 in total

1.  A Density Functional Theory Evaluation of Hydrophobic Solvation: Ne, Ar and Kr in a 50-Water Cluster. Implications for the Hydrophobic Effect.

Authors:  Nadya Kobko; Mateusz Marianski; Amparo Asensio; Robert Wieczorek; J J Dannenberg
Journal:  Comput Theor Chem       Date:  2011-11-22       Impact factor: 1.926

2.  Impact of chemical heterogeneity on protein self-assembly in water.

Authors:  Song-Ho Chong; Sihyun Ham
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-26       Impact factor: 11.205

3.  Evaporation rate of water in hydrophobic confinement.

Authors:  Sumit Sharma; Pablo G Debenedetti
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-05       Impact factor: 11.205

4.  Unraveling the hydrophobic effect, one molecule at a time.

Authors:  Shekhar Garde; Amish J Patel
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-28       Impact factor: 11.205

5.  Dry amyloid fibril assembly in a yeast prion peptide is mediated by long-lived structures containing water wires.

Authors:  Govardhan Reddy; John E Straub; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-22       Impact factor: 11.205

6.  Role of electrostatics in modulating hydrophobic interactions and barriers to hydrophobic assembly.

Authors:  Brad A Bauer; Sandeep Patel
Journal:  J Phys Chem B       Date:  2010-06-24       Impact factor: 2.991

7.  Role of water and steric constraints in the kinetics of cavity-ligand unbinding.

Authors:  Pratyush Tiwary; Jagannath Mondal; Joseph A Morrone; B J Berne
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-14       Impact factor: 11.205

8.  A self-consistent phase-field approach to implicit solvation of charged molecules with Poisson-Boltzmann electrostatics.

Authors:  Hui Sun; Jiayi Wen; Yanxiang Zhao; Bo Li; J Andrew McCammon
Journal:  J Chem Phys       Date:  2015-12-28       Impact factor: 3.488

Review 9.  Force fields for simulating the interaction of surfaces with biological molecules.

Authors:  Lewis Martin; Marcela M Bilek; Anthony S Weiss; Serdar Kuyucak
Journal:  Interface Focus       Date:  2016-02-06       Impact factor: 3.906

10.  LS-VISM: A software package for analysis of biomolecular solvation.

Authors:  Shenggao Zhou; Li-Tien Cheng; Hui Sun; Jianwei Che; Joachim Dzubiella; Bo Li; J Andrew McCammon
Journal:  J Comput Chem       Date:  2015-03-12       Impact factor: 3.376

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