| Literature DB >> 23049825 |
Janey L Wiggs1, Alex W Hewitt, Bao Jian Fan, Dan Yi Wang, Dayse R Figueiredo Sena, Colm O'Brien, Anthony Realini, Jamie E Craig, David P Dimasi, David A Mackey, Jonathan L Haines, Louis R Pasquale.
Abstract
BACKGROUND: Loss of vision in glaucoma is due to apoptotic retinal ganglion cell loss. While p53 modulates apoptosis, gene association studies between p53 variants and glaucoma have been inconsistent. In this study we evaluate the association between a p53 variant functionally known to influence apoptosis (codon 72 Pro/Arg) and the subset of primary open angle glaucoma (POAG) patients with early loss of central visual field.Entities:
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Year: 2012 PMID: 23049825 PMCID: PMC3458938 DOI: 10.1371/journal.pone.0045613
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Demographic features of the cases and controls.
| Cohort | Group | N | Female (%) | Age at diagnosis | Maximum IOP(mm Hg) | ||
| Range | Mean±SD | Range | Mean±SD | ||||
| MEEI | All glaucoma | 264 | 51.5 | 32–86 | 61.3±11.3 | 9–50 | 24.8±5.9 |
| HT-POAG | 200 | 47.5 | 32–86 | 61.4±11.3 | 9–50 | 26.3±5.5 | |
| NTG | 64 | 64.1 | 34–83 | 61.0±11.6 | 13–21 | 17.9±2.2 | |
| PS | 67 | 59.7 | 32–83 | 60.0±11.2 | 9–42 | 23.8±5.5 | |
| NS | 147 | 52.4 | 34–86 | 62.0±11.4 | 12–38 | 24.6±5.6 | |
| Controls | 400 | 55.3 | 39–92 | 66.0±11.3 | 9–22 | 16.1+2.6 | |
| GIST | All glaucoma | 308 | 60.7 | 24–89 | 63.1±12.4 | 10–74 | 25.0 |
| PS | 26 | 76.9 | 41–80 | 63.0±10.5 | 18–36 | 24.0 | |
| NS | 152 | 60.5 | 24–89 | 64.2±12.8 | 10–68 | 24.2 | |
| Controls | 178 | 70.2 | 17–95 | 65.7±22.3 | NA | NA | |
| Pooled | All glaucoma | 572 | 56.5 | 24–89 | 62.2±11.9 | ||
| PS | 93 | 64.5 | 32–83 | 60.8±11.1 | |||
| NS | 299 | 56.5 | 24–89 | 63.1±12.1 | |||
| Controls | 578 | 59.9 | 17–95 | 65.9±15.5 | |||
For controls, this refers to age at enrollment.
p = 0.02 compared to POAG.
p<0.05 compared to controls.
Abbreviations: MEEI, Massachusetts Eye and Ear Infirmary; GIST, Glaucoma Inheritance Study in Tasmania; IOP, Intraocular pressure; HT-POAG, High-tension POAG; POAG, Primary Open Angle Glaucoma; NTG, Normal Tension Glaucoma; PS, Paracentral scotoma; NS, Nasal step/arcuate scotoma; NA, Not available; SD, standard deviation.
Figure 1Visual field scoring.
The average pattern standard deviation (PSD) in each of 6 regions of the visual field corresponding to the superior paracentral, inferior paracentral, superior nasal arcuate, inferior nasal arcuate, superior nasal step, and inferior nasal step were calculated for each individual. Patients were classified as having paracentral scotomas (PS) if they had a mean PSD in one of the paracentral regions greater than 5 dB and also if the mean PSD was more than 5 dB greater than any other visual field region. Patients were classified as having nasal step/arcuate scotomas (NS) if one of the four possible nasal step or arcuate regions had a mean PSD greater than 5 dB and if one of the four possible regions was 5 dB greater than either of the paracentral regions. The visual field in panel A is an example of a PS, and panel B an example of an NS visual field. The PSD plot in panel C corresponds to the visual field in panel B.
Association of p53 codon 72 variant with NTG in the US (MEEI) cohort.
| Group | N | Genotype Frequency (%) | Allele Frequency (%) | |||||||
| CC | CG | GG |
| C | G |
| OR (95%CI) | Age-adjusted OR (95%CI) | ||
| All glaucoma | 264 | 26(9.9) | 120(45.4) | 118(44.7) | 0.032 | 172(32.6) | 356(67.4) | 0.057 | 1.27(1.00–1.61) | 1.33(1.03–1.73) |
| HT-POAG | 200 | 16(8.0) | 91(45.5) | 93(46.5) | 0.26 | 123(30.8) | 277(69.3) | 0.28 | 1.16(0.89–1.51) | 1.20(0.90–1.59) |
| NTG | 64 | 10(15.6) | 29(45.3) | 25(39.1) | 0.003 | 49(38.3) | 79(61.7) | 0.016 | 1.63(1.10–2.40) | 1.88(1.18–2.98) |
| Controls | 400 | 19(4.8) | 183(45.8) | 198(49.5) | 221(27.6) | 579(72.4) | ||||
p values are calculated using Fisher’s exact test when compared to controls.
OR and 95% CI are calculated using logistic regression when compared to controls.
Abbreviations: US, United States; MEEI, Massachusetts Eye and Ear Infirmary; POAG, Primary Open Angle Glaucoma; HT-POAG, High-tension glaucoma; NTG, Normal Tension Glaucoma.
Association of p53 codon 72 variants with paracentral scotomas (PS) in the US and GIST cohorts.
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| N | CC | CG | GG |
| C | G |
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| US | All glaucoma | 264 | 26(9.9) | 120(45.4) | 118(44.7) | 0.034 | 172(32.6) | 356(67.4) | 0.057 | 1.27(1.00–1.61) | 1.33(1.03–1.73) | ||
| PS | 67 | 15(22.4) | 28(41.8) | 24(35.8) | 2.7×10−5 | 58(43.3) | 76(56.7) | 4.8×10−4 | 2.00(1.37–2.91) | 2.20(1.43–3.39) | |||
| NS | 147 | 6(4.1) | 68(46.3) | 73(49.6) | 0.99 | 80(27.2) | 214(72.8) | 0.94 | 0.98(0.73–1.32) | 0.98(0.70–1.36) | |||
| Controls | 400 | 19(4.8) | 183(45.8) | 198(49.5) | 221(27.6) | 579(72.4) | |||||||
| GIST | All glaucoma | 308 | 26(8.4) | 118(38.3) | 164(53.3) | 0.25 | 170(27.6) | 446(72.4) | 0.11 | 1.29(0.95–1.75) | 1.24(0.91–1.67) | ||
| PS | 26 | 6(23.1) | 11(42.3) | 9(34.6) | 7.3×10−3 | 23(44.2) | 29(55.8) | 1.8×10−3 | 2.69(1.48–4.91) | 2.32(1.24–4.34) | |||
| NS | 152 | 8(5.3) | 60(39.5) | 84(55.2) | 0.36 | 76(25.0) | 228(75.0) | 0.52 | 1.13(0.79–1.62) | 1.09(0.75–1.57) | |||
| Controls | 178 | 12(6.7) | 57(32.0) | 109(61.2) | 81(22.8) | 275(77.2) | |||||||
| Pooled | All glaucoma | 572 | 52(9.1) | 238(41.6) | 282(49.3) | 0.041 | 342(29.9) | 802(70.1) | 0.046 | 1.21(1.01–1.45) | 1.21(1.00–1.46) | 0.011 | 1.28(1.06–1.54) |
| PS | 93 | 21(22.6) | 39(41.9) | 33(35.5) | 6.6×10−7 | 81(43.6) | 105(56.4) | 2.9×10−6 | 2.18(1.59–3.00) | 2.23(1.57–3.16) | 1.3×10−6 | 2.17(1.58–2.98) | |
| NS | 299 | 14(4.7) | 128(42.8) | 157(52.5) | 0.90 | 156(26.1) | 442(73.9) | 0.99 | 1.00(0.80–1.25) | 0.97(0.76–1.24) | 0.74 | 1.04(0.83–1.31) | |
| Controls | 578 | 31(5.4) | 240(41.5) | 307(53.1) | 302(26.1) | 854(73.9) | |||||||
p values are calculated using Fisher’s exact test when compared to controls.
OR and 95% CI are calculated using logistic regression when compared to controls.
p-heterogeneity >0.05 (Breslow-Day test between cohorts). Meta-analysis assumed a fixed-effect, and common OR and 95%CI are calculated using the Mantel-Haenszel method.
Abbreviations: US, United States; GIST, Glaucoma Inheritance Study in Tasmania; PS, Paracentral Scotoma; NS, Nasal Step/Arcuate Scotoma.
Association of p53 codon 72 variants with paracentral scotomas (PS) in the US and GIST cohorts stratified by gender.
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| N | CC | CG | GG |
| C | G |
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| US | Male | PS | 27 | 7(25.9) | 13(48.2) | 7(25.9) | 0.0010 | 27(50.0) | 27(50.0) | 0.0012 | 2.73(1.52–4.89) | 3.15(1.61–6.18) | ||
| Controls | 179 | 9(5.0) | 78(43.6) | 92(51.4) | 96(26.8) | 262(73.2) | ||||||||
| Female | PS | 40 | 8(20.0) | 15(37.5) | 17(42.5) | 0.0051 | 31(38.8) | 49(61.2) | 0.064 | 1.60(0.98–2.63) | 1.68(0.95–3.00) | |||
| Controls | 221 | 10(4.5) | 105(47.5) | 106(48.0) | 125(28.3) | 317(71.7) | ||||||||
| GIST | Male | PS | 6 | 3(50.0) | 1(16.7) | 2(33.3) | 0.035 | 7(58.3) | 5(41.7) | 0.036 | 4.31(1.26–14.74) | 2.27(0.62–8.36) | ||
| Controls | 53 | 5(9.4) | 16(30.2) | 32(60.4) | 26(24.5) | 80(75.5) | ||||||||
| Female | PS | 20 | 3(15.0) | 10(50.0) | 7(35.0) | 0.041 | 16(40.0) | 24(60.0) | 0.018 | 2.36(1.17–4.76) | 2.45(1.18–5.11) | |||
| Controls | 125 | 7(5.6) | 41(32.8) | 77(61.6) | 55(22.0) | 195(78.0) | ||||||||
| Pooled | Male | PS | 33 | 10(30.3) | 14(42.4) | 9(27.3) | 1.1×10−4 | 34(51.5) | 32(48.5) | 7.1×10−5 | 2.98(1.76–5.04) | 2.90(1.62–5.21) | 2.8×10−5 | 2.96(1.75–5.01) |
| Controls | 232 | 14(6.0) | 94(40.5) | 124(53.5) | 122(26.3) | 342(73.7) | ||||||||
| Female | PS | 60 | 11(18.3) | 25(41.7) | 24(40.0) | 0.0018 | 47(39.2) | 73(60.8) | 0.0041 | 1.83(1.22–2.74) | 1.89(1.21–2.95) | 0.0034 | 1.82(1.21–2.72) | |
| Controls | 346 | 17(4.9) | 146(42.2) | 183(52.9) | 180(26.0) | 512(74.0) | ||||||||
p values are calculated using Fisher’s exact test when compared to controls.
OR and 95%CI are calculated using logistic regression when compared to controls.
p-heterogeneity >0.05 (Breslow-Day test between cohorts). Meta-analysis assumed a fixed-effect, and common OR and 95% CI are calculated using the Mantel-Haenszel method.
Abbreviations: US, United States; GIST, Glaucoma Inheritance Study in Tasmania; PS, Paracentral Scotoma.