Literature DB >> 23049229

Model-controlled flooding with applications to image reconstruction and segmentation.

Quanli Wang1, Mike West.   

Abstract

We discuss improved image reconstruction and segmentation in a framework we term model-controlled flooding (MCF). This extends the watershed transform for segmentation by allowing the integration of a priori information about image objects into flooding simulation processes. Modeling the initial seeding, region growing, and stopping rules of the watershed flooding process allows users to customize the simulation with user-defined or default model functions incorporating prior information. It also extends a more general class of transforms based on connected attribute filters by allowing the modification of connected components of a grayscale image, thus providing more flexibility in image reconstruction. MCF reconstruction defines images with desirable features for further segmentation using existing methods and can lead to substantial improvements. We demonstrate the MCF framework using a size transform that extends grayscale area opening and attribute thickening/thinning, and give examples from several areas: concealed object detection, speckle counting in biological single cell studies, and analyses of benchmark microscopic image data sets. MCF achieves benchmark error rates well below those reported in the recent literature and in comparison with other algorithms, while being easily adapted to new imaging contexts.

Entities:  

Year:  2012        PMID: 23049229      PMCID: PMC3462023          DOI: 10.1117/1.JEI.21.2.023020

Source DB:  PubMed          Journal:  J Electron Imaging        ISSN: 1017-9909            Impact factor:   0.945


  20 in total

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6.  Concurrent computation of attribute filters on shared memory parallel machines.

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7.  Detection and segmentation of concealed objects in terahertz images.

Authors:  Xilin Shen; Charles R Dietlein; Erich Grossman; Zoya Popovic; François G Meyer
Journal:  IEEE Trans Image Process       Date:  2008-12       Impact factor: 10.856

Review 8.  Imaging in systems biology.

Authors:  Sean G Megason; Scott E Fraser
Journal:  Cell       Date:  2007-09-07       Impact factor: 41.582

9.  Single-cell quantification of molecules and rates using open-source microscope-based cytometry.

Authors:  Andrew Gordon; Alejandro Colman-Lerner; Tina E Chin; Kirsten R Benjamin; Richard C Yu; Roger Brent
Journal:  Nat Methods       Date:  2007-01-21       Impact factor: 28.547

10.  CellProfiler: image analysis software for identifying and quantifying cell phenotypes.

Authors:  Anne E Carpenter; Thouis R Jones; Michael R Lamprecht; Colin Clarke; In Han Kang; Ola Friman; David A Guertin; Joo Han Chang; Robert A Lindquist; Jason Moffat; Polina Golland; David M Sabatini
Journal:  Genome Biol       Date:  2006-10-31       Impact factor: 13.583

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  2 in total

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2.  Orion: Detecting regions of the human non-coding genome that are intolerant to variation using population genetics.

Authors:  Ayal B Gussow; Brett R Copeland; Ryan S Dhindsa; Quanli Wang; Slavé Petrovski; William H Majoros; Andrew S Allen; David B Goldstein
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